RetrogeneDB ID: | retro_eeur_686 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_69566:499..748(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF1AX | ||
Ensembl ID: | ENSEEUG00000007518 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 1A, X-linked [Source:HGNC Symbol;Acc:3250] |
Percent Identity: | 83.53 % |
Parental protein coverage: | 58.04 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | PKNKGKGGKNRRRG-KNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRK-KV |
P..KGKG.KNR.RG.K.ENES.KRELVFKED.QEYAQVI.MLGNG.LEAMCFDGVKR.CHIRG..RK.KV | |
Retrocopy | PSDKGKGVKNRHRG>KSENESKKRELVFKEDEQEYAQVIQMLGNGQLEAMCFDGVKRICHIRG*WRK<KV |
Parental | WINTSDIILVGLRDY |
WINTSDIILVGLRDY | |
Retrocopy | WINTSDIILVGLRDY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 27 .39 RPM |
SRP017611_kidney | 0 .56 RPM | 44 .63 RPM |
SRP017611_liver | 0 .64 RPM | 23 .96 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000017633 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000005371 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000007518 | 3 retrocopies |
retro_eeur_408, retro_eeur_567, retro_eeur_686 ,
|
Homo sapiens | ENSG00000173674 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012977 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000027820 | 1 retrocopy | |
Mus musculus | ENSMUSG00000067194 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008182 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020176 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000022504 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000005736 | 1 retrocopy | |
Sorex araneus | ENSSARG00000013528 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000010995 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000029864 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002012 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000009927 | 4 retrocopies |