RetrogeneDB ID: | retro_btau_725 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 18:50926638..50927031(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCDC59 | ||
Ensembl ID: | ENSBTAG00000036282 | ||
Aliases: | None | ||
Description: | Thyroid transcription factor 1-associated protein 26 [Source:UniProtKB/Swiss-Prot;Acc:A5PJN1] |
Percent Identity: | 63.77 % |
Parental protein coverage: | 56.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | YPDHLKHLYLAEEERLKKQLRKADQPLSEEQVDQPLPEDQGSSDQALSEERCSIEQPQPAEPCSIRINSI |
.P.H..HLYLA.EERL.KQLRKADQ...E.Q..Q.LPEDQG..DQALSE..CS.E...P...CS.RI.S. | |
Retrocopy | HPGHWNHLYLAGEERLSKQLRKADQSWLE-QGEQSLPEDQGTPDQALSEGHCSTERLLPEGHCSTRIYSM |
Parental | -NIPKKNKKKTSNQKAQEEYEQIQAKRAAKKQEFERRKQEREEAQRLYKKKK-MEVFKILSKKTKKGQ |
.NIPK...KKTSNQKA.EEYE..QA..AAKKQEFER.KQE..E....Y..KK.MEVFK.LS.KT..GQ | |
Retrocopy | >NIPK--QKKTSNQKAHEEYE--QAPCAAKKQEFERQKQETGEPAKRYQHKK<MEVFKMLSQKTQNGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 24 .95 RPM |
ERP005899_muscle | 0 .00 RPM | 11 .19 RPM |
SRP017611_brain | 0 .00 RPM | 16 .08 RPM |
SRP017611_kidney | 0 .00 RPM | 16 .00 RPM |
SRP017611_liver | 0 .00 RPM | 10 .87 RPM |
SRP030211_testis | 0 .02 RPM | 109 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016875 | 1 retrocopy | |
Bos taurus | ENSBTAG00000036282 | 4 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000007788 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011546 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000003005 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000256 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000025296 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000000967 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000017824 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000004383 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005266 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008887 | 7 retrocopies |