Parental gene:

CCDC59, ENSBTAG00000036282

Aliases:None
Description:Thyroid transcription factor 1-associated protein 26 [Source:UniProtKB/Swiss-Prot;Acc:A5PJN1]
Organism:Cow (Bos taurus)
Coordinates:5:11972438..11978864(-)


>ENSBTAG00000036282
ATGGCGCCCGTTTGGCCGGCAGCAAGGGGGCGGACAGGGGGGTTGGGTACGCGTGGAAGAGTTTCACCGGTTGAATTCAG
AAATAAGAATGTGAAACGGAAAACGTGGCGACCTAATCATCTGCAAGCCTTCGCGGGGAGCGTTCGCGAAGGACAAGGCT
TTGCATTTCGAAGAAAACTCAAGATTCAGCAAACTTATAAGAAATTACTCCGGAGGGAAAAGAAGTCTCAAACCCCAAGT
GAATCCCCCTTCACAGATTGGTATCCTGATCATCTGAAACATCTTTATTTAGCTGAAGAGGAAAGACTCAAGAAGCAGCT
TAGAAAAGCTGACCAGCCTCTGTCAGAAGAACAAGTTGATCAGCCTTTGCCAGAAGACCAAGGTAGCAGTGACCAGGCTT
TGTCTGAAGAACGCTGTAGCATTGAGCAGCCTCAGCCAGCAGAACCGTGTAGCATAAGAATAAACTCCATTAATATTCCA
AAGAAAAATAAAAAGAAAACGTCAAATCAAAAAGCACAGGAAGAATATGAGCAGATACAAGCGAAGCGTGCTGCTAAGAA
ACAAGAATTTGAGAGGAGAAAACAAGAGAGAGAAGAAGCTCAAAGGCTCTACAAAAAGAAGAAAATGGAAGTGTTCAAAA
TACTGAGCAAAAAGACTAAAAAGGGCCAACCAAACTTGAATTTACAAATGGAGTATCTTCTTAAAAAAATACAAGAAAAT
AATTAA

Library Parental gene expression (RPM)
ERP005899_liver 24 .95 RPM
ERP005899_muscle 11 .19 RPM
SRP017611_brain 16 .08 RPM
SRP017611_kidney 16 .00 RPM
SRP017611_liver 10 .87 RPM
SRP030211_testis 109 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016875 ortholog_one2one 1 retrogene
retro_amel_954,
Choloepus hoffmanni ENSCHOG00000007788 ortholog_one2one 1 retrogene
retro_chof_1648,
Dasypus novemcinctus ENSDNOG00000011546 ortholog_one2one 1 retrogene
retro_dnov_1033,
Dipodomys ordii ENSDORG00000003005 ortholog_one2one 1 retrogene
retro_dord_485,
Echinops telfairi ENSETEG00000000256 ortholog_one2one 2 retrogenes
retro_etel_1338, retro_etel_1789,
Gorilla gorilla ENSGGOG00000025296 ortholog_one2many 2 retrogenes
retro_ggor_1386, retro_ggor_99,
Microcebus murinus ENSMICG00000000967 ortholog_one2one 4 retrogenes
retro_mmur_1456, retro_mmur_354, retro_mmur_689, retro_mmur_909,
Oryctolagus cuniculus ENSOCUG00000017824 ortholog_one2one 2 retrogenes
retro_ocun_1782, retro_ocun_498,
Otolemur garnettii ENSOGAG00000004383 ortholog_one2one 1 retrogene
retro_ogar_2065,
Pan troglodytes ENSPTRG00000005266 ortholog_one2one 1 retrogene
retro_ptro_1270,
Tupaia belangeri ENSTBEG00000008887 ortholog_one2one 7 retrogenes
retro_tbel_1515, retro_tbel_2047, retro_tbel_2126, retro_tbel_302, retro_tbel_3391, retro_tbel_3721, retro_tbel_972,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_725 63.77 56.43
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2. retro_btau_726 62.32 56.43
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3. retro_btau_727 60.26 63.90
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4. retro_btau_728 60.26 63.90
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Download FASTA sequences of all ENSBTAG00000036282 retrocopies