Parental gene: | CCDC59, ENSBTAG00000036282 |
| Aliases: | None |
| Description: | Thyroid transcription factor 1-associated protein 26 [Source:UniProtKB/Swiss-Prot;Acc:A5PJN1] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 5:11972438..11978864(-) |
>ENSBTAG00000036282
ATGGCGCCCGTTTGGCCGGCAGCAAGGGGGCGGACAGGGGGGTTGGGTACGCGTGGAAGAGTTTCACCGGTTGAATTCAG
AAATAAGAATGTGAAACGGAAAACGTGGCGACCTAATCATCTGCAAGCCTTCGCGGGGAGCGTTCGCGAAGGACAAGGCT
TTGCATTTCGAAGAAAACTCAAGATTCAGCAAACTTATAAGAAATTACTCCGGAGGGAAAAGAAGTCTCAAACCCCAAGT
GAATCCCCCTTCACAGATTGGTATCCTGATCATCTGAAACATCTTTATTTAGCTGAAGAGGAAAGACTCAAGAAGCAGCT
TAGAAAAGCTGACCAGCCTCTGTCAGAAGAACAAGTTGATCAGCCTTTGCCAGAAGACCAAGGTAGCAGTGACCAGGCTT
TGTCTGAAGAACGCTGTAGCATTGAGCAGCCTCAGCCAGCAGAACCGTGTAGCATAAGAATAAACTCCATTAATATTCCA
AAGAAAAATAAAAAGAAAACGTCAAATCAAAAAGCACAGGAAGAATATGAGCAGATACAAGCGAAGCGTGCTGCTAAGAA
ACAAGAATTTGAGAGGAGAAAACAAGAGAGAGAAGAAGCTCAAAGGCTCTACAAAAAGAAGAAAATGGAAGTGTTCAAAA
TACTGAGCAAAAAGACTAAAAAGGGCCAACCAAACTTGAATTTACAAATGGAGTATCTTCTTAAAAAAATACAAGAAAAT
AATTAA
ATGGCGCCCGTTTGGCCGGCAGCAAGGGGGCGGACAGGGGGGTTGGGTACGCGTGGAAGAGTTTCACCGGTTGAATTCAG
AAATAAGAATGTGAAACGGAAAACGTGGCGACCTAATCATCTGCAAGCCTTCGCGGGGAGCGTTCGCGAAGGACAAGGCT
TTGCATTTCGAAGAAAACTCAAGATTCAGCAAACTTATAAGAAATTACTCCGGAGGGAAAAGAAGTCTCAAACCCCAAGT
GAATCCCCCTTCACAGATTGGTATCCTGATCATCTGAAACATCTTTATTTAGCTGAAGAGGAAAGACTCAAGAAGCAGCT
TAGAAAAGCTGACCAGCCTCTGTCAGAAGAACAAGTTGATCAGCCTTTGCCAGAAGACCAAGGTAGCAGTGACCAGGCTT
TGTCTGAAGAACGCTGTAGCATTGAGCAGCCTCAGCCAGCAGAACCGTGTAGCATAAGAATAAACTCCATTAATATTCCA
AAGAAAAATAAAAAGAAAACGTCAAATCAAAAAGCACAGGAAGAATATGAGCAGATACAAGCGAAGCGTGCTGCTAAGAA
ACAAGAATTTGAGAGGAGAAAACAAGAGAGAGAAGAAGCTCAAAGGCTCTACAAAAAGAAGAAAATGGAAGTGTTCAAAA
TACTGAGCAAAAAGACTAAAAAGGGCCAACCAAACTTGAATTTACAAATGGAGTATCTTCTTAAAAAAATACAAGAAAAT
AATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 16 .08 RPM |
| SRP017611_kidney | 16 .00 RPM |
| SRP017611_liver | 10 .87 RPM |
| ERP005899_muscle | 11 .19 RPM |
| ERP005899_liver | 24 .95 RPM |
| SRP030211_testis | 109 .83 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000016875 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000007788 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000011546 | ortholog_one2one | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000003005 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000000256 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000025296 | ortholog_one2many | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000000967 | ortholog_one2one | 4 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000017824 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000004383 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000005266 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000008887 | ortholog_one2one | 7 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_725 | 63.77 | 56.43 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_btau_726 | 62.32 | 56.43 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_btau_727 | 60.26 | 63.90 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_btau_728 | 60.26 | 63.90 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000036282 retrocopies