RetrogeneDB ID: | retro_ggor_99 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 6:150466746..150467469(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000026982 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCDC59 | ||
Ensembl ID: | ENSGGOG00000025296 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.79 % |
Parental protein coverage: | 99.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAPVRRSAKWRPGGIEARGEGVSTVGYRNKNVKQKTWRPNHPQAFVGSVREGQGFAFRRKLRIQQSYKKL |
M.PVRR.AKWRPGG.E.RGEGVST.GYRNKNVKQKTWRPNHPQAFVG.VR.GQGFAFRRKLRIQQSYKKL | |
Retrocopy | MVPVRRAAKWRPGGFEVRGEGVSTFGYRNKNVKQKTWRPNHPQAFVGNVRKGQGFAFRRKLRIQQSYKKL |
Parental | LRKEKKAQTSLESQFTDRYPDNLKHLYLAEEERHRKQPRKVDHPLSEQVHQPLLEEQCSIDQPLFEDQCS |
LRKEKKAQTSLESQFTDRYPDNLKHLY...EER.RKQP.KVDH.LSEQVHQPL.EEQCS.DQ.LFEDQCS | |
Retrocopy | LRKEKKAQTSLESQFTDRYPDNLKHLYFQIEERLRKQPKKVDHALSEQVHQPLPEEQCSTDQALFEDQCS |
Parental | FDQPQPEEQSIKTVNSFTIPKKNKKKTSNQKAQEEYEQVQAKRAAKKQEFERRKQEREEAQRQYKKKKME |
FDQPQPEEQ..KTVNSFTIPKKNKKKTSNQKAQEEYEQVQAKRAAKKQEFERRKQERE.AQR.YKKKKME | |
Retrocopy | FDQPQPEEQCSKTVNSFTIPKKNKKKTSNQKAQEEYEQVQAKRAAKKQEFERRKQERE-AQRHYKKKKME |
Parental | VFKILNKKTKKGQPNLNVQMEYLLQKIQE |
VFKILNK.TKKGQPNLNVQ.EYLLQKIQE | |
Retrocopy | VFKILNKETKKGQPNLNVQIEYLLQKIQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 4 .75 RPM |
SRP007412_cerebellum | 0 .04 RPM | 4 .37 RPM |
SRP007412_heart | 0 .00 RPM | 1 .91 RPM |
SRP007412_kidney | 0 .00 RPM | 6 .62 RPM |
SRP007412_liver | 0 .05 RPM | 5 .64 RPM |
SRP007412_testis | 0 .10 RPM | 25 .80 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016875 | 1 retrocopy | |
Bos taurus | ENSBTAG00000036282 | 4 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000007788 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011546 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000003005 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000256 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000025296 | 2 retrocopies |
retro_ggor_1386, retro_ggor_99 ,
|
Microcebus murinus | ENSMICG00000000967 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000017824 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000004383 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005266 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008887 | 7 retrocopies |