RetrogeneDB ID:

retro_ggor_99

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:6:150466746..150467469(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSGGOG00000026982
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:CCDC59
Ensembl ID:ENSGGOG00000025296
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_99
ATGGTGCCGGTGAGGCGGGCGGCGAAGTGGCGGCCTGGTGGTTTTGAGGTGCGTGGTGAAGGGGTTTCCACGTTCGGGTA
CAGGAATAAGAATGTGAAACAGAAGACGTGGCGGCCTAACCACCCGCAAGCCTTCGTGGGGAACGTTCGCAAGGGACAAG
GATTTGCTTTTCGAAGAAAACTGAGAATACAGCAAAGTTACAAGAAATTGCTACGGAAGGAAAAGAAGGCCCAAACGTCA
CTGGAATCTCAATTCACAGATCGATACCCAGATAATCTGAAACATCTCTATTTTCAGATAGAGGAAAGACTTAGGAAGCA
ACCAAAAAAAGTTGACCATGCTTTGTCAGAACAAGTTCACCAGCCTTTGCCTGAAGAACAGTGTAGCACTGACCAGGCTT
TATTTGAAGATCAGTGTAGCTTTGACCAGCCTCAGCCAGAAGAACAATGTAGTAAAACAGTAAACTCCTTTACAATTCCA
AAGAAAAATAAAAAGAAAACATCAAATCAAAAAGCACAAGAAGAATATGAACAGGTACAAGCTAAACGTGCTGCTAAGAA
ACAAGAATTCGAGAGGAGAAAACAGGAGAGAGAAGCCCAAAGGCACTACAAAAAGAAGAAAATGGAAGTGTTTAAAATAT
TGAACAAAGAGACTAAAAAAGGCCAACCAAACTTGAATGTACAAATAGAGTACCTTCTTCAAAAAATACAAGAAAAAAGT
TAA

ORF - retro_ggor_99 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.79 %
Parental protein coverage: 99.17 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAPVRRSAKWRPGGIEARGEGVSTVGYRNKNVKQKTWRPNHPQAFVGSVREGQGFAFRRKLRIQQSYKKL
M.PVRR.AKWRPGG.E.RGEGVST.GYRNKNVKQKTWRPNHPQAFVG.VR.GQGFAFRRKLRIQQSYKKL
RetrocopyMVPVRRAAKWRPGGFEVRGEGVSTFGYRNKNVKQKTWRPNHPQAFVGNVRKGQGFAFRRKLRIQQSYKKL
ParentalLRKEKKAQTSLESQFTDRYPDNLKHLYLAEEERHRKQPRKVDHPLSEQVHQPLLEEQCSIDQPLFEDQCS
LRKEKKAQTSLESQFTDRYPDNLKHLY...EER.RKQP.KVDH.LSEQVHQPL.EEQCS.DQ.LFEDQCS
RetrocopyLRKEKKAQTSLESQFTDRYPDNLKHLYFQIEERLRKQPKKVDHALSEQVHQPLPEEQCSTDQALFEDQCS
ParentalFDQPQPEEQSIKTVNSFTIPKKNKKKTSNQKAQEEYEQVQAKRAAKKQEFERRKQEREEAQRQYKKKKME
FDQPQPEEQ..KTVNSFTIPKKNKKKTSNQKAQEEYEQVQAKRAAKKQEFERRKQERE.AQR.YKKKKME
RetrocopyFDQPQPEEQCSKTVNSFTIPKKNKKKTSNQKAQEEYEQVQAKRAAKKQEFERRKQERE-AQRHYKKKKME
ParentalVFKILNKKTKKGQPNLNVQMEYLLQKIQE
VFKILNK.TKKGQPNLNVQ.EYLLQKIQE
RetrocopyVFKILNKETKKGQPNLNVQIEYLLQKIQE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 4 .75 RPM
SRP007412_cerebellum 0 .04 RPM 4 .37 RPM
SRP007412_heart 0 .00 RPM 1 .91 RPM
SRP007412_kidney 0 .00 RPM 6 .62 RPM
SRP007412_liver 0 .05 RPM 5 .64 RPM
SRP007412_testis 0 .10 RPM 25 .80 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_99 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_99 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 12 parental genes, and 27 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000168751 retrocopy
Bos taurus ENSBTAG000000362824 retrocopies
Choloepus hoffmanni ENSCHOG000000077881 retrocopy
Dasypus novemcinctus ENSDNOG000000115461 retrocopy
Dipodomys ordii ENSDORG000000030051 retrocopy
Echinops telfairi ENSETEG000000002562 retrocopies
Gorilla gorilla ENSGGOG00000025296 2 retrocopies
retro_ggor_1386, retro_ggor_99 ,
Microcebus murinus ENSMICG000000009674 retrocopies
Oryctolagus cuniculus ENSOCUG000000178242 retrocopies
Otolemur garnettii ENSOGAG000000043831 retrocopy
Pan troglodytes ENSPTRG000000052661 retrocopy
Tupaia belangeri ENSTBEG000000088877 retrocopies



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