RetrogeneDB ID: | retro_btau_728 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 18:51091017..51091466(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCDC59 | ||
Ensembl ID: | ENSBTAG00000036282 | ||
Aliases: | None | ||
Description: | Thyroid transcription factor 1-associated protein 26 [Source:UniProtKB/Swiss-Prot;Acc:A5PJN1] |
Percent Identity: | 60.26 % |
Parental protein coverage: | 63.9 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | YPDHLKHLYLAEEERLKKQLRKADQPLSEEQVDQPLPEDQGSSDQALSEERCSIEQPQPAEPCSIRINSI |
.PDH..HLYLA.EERL.KQLRKADQ...E.Q..Q.LPE.QG..D.ALSE..CS.E...P...CS.RI.S. | |
Retrocopy | HPDHRNHLYLAGEERLSKQLRKADQSWLE-QGEQSLPENQGTPDLALSEGHCSTERLLPEGHCSTRIYSM |
Parental | -NIPKKNKKKTSNQKAQEEYEQIQAKRAAKKQEFERRKQEREEAQRLYKKKKMEVFKILSKKT-KKGQPN |
.NIPK...KKTSNQKAQ.EYEQ..A.RA.KKQEFER.KQER.EA.RLY..KKM.VFK..S.KT..K.Q.. | |
Retrocopy | >NIPKQ--KKTSNQKAQAEYEQ--ATRAVKKQEFERQKQERGEAPRLYQHKKMQVFKMRSQKT>SKWQAK |
Parental | LNLQMEYLLKKIQENN |
.........KKI.E.N | |
Retrocopy | YGFTNGVFSKKILEKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 24 .95 RPM |
ERP005899_muscle | 0 .00 RPM | 11 .19 RPM |
SRP017611_brain | 0 .00 RPM | 16 .08 RPM |
SRP017611_kidney | 0 .00 RPM | 16 .00 RPM |
SRP017611_liver | 0 .00 RPM | 10 .87 RPM |
SRP030211_testis | 0 .00 RPM | 109 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016875 | 1 retrocopy | |
Bos taurus | ENSBTAG00000036282 | 4 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000007788 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011546 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000003005 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000256 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000025296 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000000967 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000017824 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000004383 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005266 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008887 | 7 retrocopies |