RetrogeneDB ID: | retro_btau_763 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 19:43186285..43187074(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCNG1 | ||
Ensembl ID: | ENSBTAG00000006607 | ||
Aliases: | None | ||
Description: | Cyclin-G1 [Source:UniProtKB/Swiss-Prot;Acc:Q5E9I1] |
Percent Identity: | 92.78 % |
Parental protein coverage: | 89.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MIEVLTTTDSQKLLHQLNALLEQELRCQPKVCGLRLIESAHDNGLRMTARLRDFEVKDLLSLTQFFGFDT |
MIEVLTTTDSQKLLHQLNALLEQELRCQPKVCGLRLIES.HDNGLRMTARLRD.EVKDLLSLTQFFGFDT | |
Retrocopy | MIEVLTTTDSQKLLHQLNALLEQELRCQPKVCGLRLIESTHDNGLRMTARLRDLEVKDLLSLTQFFGFDT |
Parental | ETFSLAVNLLDRFLSKMKVQPKHLGCVGLSCFYLAVKSTEEERNVPLATDLIRISQYRFTVSDLMRMEKI |
ETFSLAVNLLDRFLSKM.VQPKHLGCVGLSCFYLAVKSTEEERNVPLATDLIRISQY.FTVSDLMR.... | |
Retrocopy | ETFSLAVNLLDRFLSKMRVQPKHLGCVGLSCFYLAVKSTEEERNVPLATDLIRISQYKFTVSDLMRXXXX |
Parental | VLEKVCWKVKATTAFQFLQLYYSLLQENVPHERKSSLNFERLEAQLKACYCRIIFSKAKPSVLALSIIAL |
........VKATTAFQFLQLYYSLLQEN.PHERKSSLNFERLEAQLKACYCRIIFSKAKPSVLALSIIAL | |
Retrocopy | XXXXXXXXVKATTAFQFLQLYYSLLQENMPHERKSSLNFERLEAQLKACYCRIIFSKAKPSVLALSIIAL |
Parental | EIQAQKYIELTEGVERLQKHSKISGRDLTFWQELVSKCLAEYSSNKCAKPNVQ |
EIQAQKYIELTEGVERLQKH.KISGRDLTFWQELVSKCLAEYSSNKCA.PNVQ | |
Retrocopy | EIQAQKYIELTEGVERLQKHPKISGRDLTFWQELVSKCLAEYSSNKCARPNVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 70 .94 RPM |
ERP005899_muscle | 0 .69 RPM | 747 .44 RPM |
SRP017611_brain | 0 .05 RPM | 44 .26 RPM |
SRP017611_kidney | 0 .00 RPM | 122 .46 RPM |
SRP017611_liver | 0 .08 RPM | 44 .55 RPM |
SRP030211_testis | 0 .22 RPM | 30 .32 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006607 | 2 retrocopies |
retro_btau_1064, retro_btau_763 ,
|
Canis familiaris | ENSCAFG00000017207 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015341 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000014293 | 1 retrocopy | |
Equus caballus | ENSECAG00000018880 | 1 retrocopy | |
Felis catus | ENSFCAG00000027366 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001667 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007651 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020326 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002129 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000007639 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017902 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000007465 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000008340 | 1 retrocopy |