RetrogeneDB ID: | retro_shar_328 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841357.1:1621238..1621861(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCNG1 | ||
Ensembl ID: | ENSSHAG00000007465 | ||
Aliases: | None | ||
Description: | cyclin G1 [Source:HGNC Symbol;Acc:1592] |
Percent Identity: | 72.04 % |
Parental protein coverage: | 69.46 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | LRLIESAHDNGLRMTARLRDFEVKDLLSLTQFFGFDTETFSLAVNLLDRFLSKMKVQPK-HLGCVGLSCF |
LRLIESAHDNGL.MT.R.R.FEVK.LL.L.QF.GFDTETFSL..NLLD.FLSKMKVQP...LG.VGLSCF | |
Retrocopy | LRLIESAHDNGLQMTVR*RNFEVKNLLNLIQFLGFDTETFSLTMNLLDQFLSKMKVQPT<NLGYVGLSCF |
Parental | YLAVKSTEEERNVPLATDLIRISQYKFTVSDLMRMEKIVLEKVCWKVKATTAFQFLQLYYSLIHENLPFE |
YLAVKSTEEE.NVPLATDL..ISQYKFTVS..M.MEKI.LE..C.K.KAT.AF.FLQLYYS.IHENLP.E | |
Retrocopy | YLAVKSTEEESNVPLATDLVQISQYKFTVSEVMKMEKIILENMCRKAKATIAFHFLQLYYSFIHENLPLE |
Parental | RRKNLS-FERLEAQLKACHCRI-MFSKAKPSVLALSIIALEIQAQKFIELT-EGVECLQKHSKINGRDLT |
RRKNLS.F......L...H.....FSKAKP..L.LSI.ALEIQAQKF.E.T.E..ECLQ.H.KIN..DL. | |
Retrocopy | RRKNLS<F*KTGSLLSIRHAIVKLFSKAKPFLLPLSITALEIQAQKFTEFT>EKAECLQNHCKINSGDLP |
Parental | F |
F | |
Retrocopy | F |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006607 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000017207 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015341 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000000880 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000015166 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000014293 | 1 retrocopy | |
Equus caballus | ENSECAG00000018880 | 1 retrocopy | |
Felis catus | ENSFCAG00000027366 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001667 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007651 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020326 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002129 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000007639 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016016 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017902 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000007465 | 2 retrocopies |
retro_shar_328 , retro_shar_490,
|
Vicugna pacos | ENSVPAG00000008340 | 1 retrocopy |