RetrogeneDB ID: | retro_ocun_1287 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 7:6777968..6778767(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000002129 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.28 % |
Parental protein coverage: | 91.86 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | SRCQPKVCGLRLIESAHDNGLR-MTARLRDFEVKDLLSLTQFFGFDTETFSLAVNLLDRFLSKMKVQPKH |
SRCQPK.CGLRLIESAH...LR.MT..L.DF.VKD...LT..F...T.TFSLA.N.LD.FLSKMKVQPKH | |
Retrocopy | SRCQPKACGLRLIESAHNSDLR<MTTKLSDFKVKD---LTLSFSALTQTFSLAMNFLDKFLSKMKVQPKH |
Parental | LGCVGLSCFYLAVK-SIEEERNVPLATDLIRISQYRF-TVSDLMRMEKIVLEKVCWKVKATT-AFQFLQL |
LGCV.LSCFY.AVK.S.EEERNVPLAT.LIRISQY.F..VS.LMRMEKI.LEK.CWKV.AT...F.F... | |
Retrocopy | LGCVSLSCFYFAVK>SVEEERNVPLATELIRISQYIF>MVSGLMRMEKIALEKLCWKVRATS>SFSFCNS |
Parental | YYSLIQENLPFERRNNLNFERLEAQLKACHCRIIFSKAKP-SVLALSIIALEIQAQQCVELTEGIECLQK |
Y.SLI..NLPFER.N.LNFERLEAQLKACHCRIIFSK.KP.SVLALSI.ALEIQAQ...ELTEGIE.LQK | |
Retrocopy | Y-SLI*DNLPFERGNSLNFERLEAQLKACHCRIIFSKTKP<SVLALSITALEIQAQKYLELTEGIE*LQK |
Parental | HSKINGRDLTFWQELVSKCLTEYSSNKCSKPNVQKLKWIVSGRTARQLKHSYYRIAHLPTIPEMVP |
H.KINGRDLTF.QELV.KCLTE.SSNKCSK.NV..LKWIV..........SYY.I.HLPTIPEMVP | |
Retrocopy | HTKINGRDLTF*QELVLKCLTEHSSNKCSKLNVRELKWIV-WAYCMAVEASYYSITHLPTIPEMVP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 46 .58 RPM |
SRP017611_kidney | 0 .00 RPM | 72 .47 RPM |
SRP017611_liver | 0 .00 RPM | 34 .38 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006607 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000017207 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015341 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000000880 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000015166 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000014293 | 1 retrocopy | |
Equus caballus | ENSECAG00000018880 | 1 retrocopy | |
Felis catus | ENSFCAG00000027366 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001667 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007651 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020326 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002129 | 3 retrocopies |
retro_ocun_1287 , retro_ocun_512, retro_ocun_615,
|
Otolemur garnettii | ENSOGAG00000007639 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016016 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017902 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000007465 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000008340 | 1 retrocopy |