Parental gene:

ENSOCUG00000002129

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:3:44664854..44670511(+)


>ENSOCUG00000002129
ATGATAGAAGTACTGACAACAACTGACTCTCAGAAACTGCTACACCAGCTGAACACTTTGTTGGAACAGGAGTCTAGATG
TCAGCCAAAGGTCTGCGGCTTGAGACTAATTGAGTCTGCACACGATAATGGCCTCAGAATGACTGCACGGCTGAGGGACT
TCGAAGTGAAAGATCTTCTTAGTCTCACTCAGTTTTTTGGCTTTGACACGGAGACATTTTCTCTAGCTGTGAATTTACTG
GACAGATTCCTGTCTAAAATGAAGGTACAGCCCAAGCACCTTGGATGTGTTGGTCTGAGCTGTTTTTATTTGGCTGTAAA
ATCAATAGAAGAGGAAAGGAATGTGCCACTGGCAACTGACTTGATCCGGATAAGTCAGTATAGGTTTACGGTTTCAGACT
TGATGAGAATGGAAAAGATTGTATTGGAGAAGGTGTGTTGGAAAGTCAAAGCTACTACTGCCTTTCAGTTTCTGCAACTC
TATTATTCACTCATTCAAGAGAACTTGCCATTTGAAAGGAGAAATAACCTTAATTTTGAAAGACTGGAAGCTCAACTTAA
GGCATGTCACTGCAGGATCATATTTTCTAAAGCAAAGCCTTCTGTGTTGGCTTTGTCTATCATTGCATTGGAGATCCAAG
CACAGCAGTGTGTGGAGTTAACAGAAGGAATAGAATGTCTTCAGAAACATTCCAAGATAAATGGCAGAGATTTGACCTTC
TGGCAAGAGCTTGTATCAAAGTGCTTAACTGAGTATTCATCAAACAAGTGTTCAAAACCGAATGTTCAGAAGTTGAAATG
GATTGTGTCTGGGCGTACCGCACGGCAATTGAAGCATAGTTACTACAGAATAGCTCACCTTCCAACAATTCCTGAAATGG
TTCCTTAA

Library Parental gene expression (RPM)
SRP017611_brain 46 .58 RPM
SRP017611_kidney 72 .47 RPM
SRP017611_liver 34 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006607 possible_ortholog 2 retrogenes
retro_btau_1064, retro_btau_763,
Canis familiaris ENSCAFG00000017207 possible_ortholog 1 retrogene
retro_cfam_1657,
Callithrix jacchus ENSCJAG00000015341 ortholog_many2many 1 retrogene
retro_cjac_2319,
Cavia porcellus ENSCPOG00000000880 ortholog_one2many 1 retrogene
retro_cpor_771,
Dasypus novemcinctus ENSDNOG00000015166 ortholog_one2many 1 retrogene
retro_dnov_1275,
Dipodomys ordii ENSDORG00000014293 possible_ortholog 1 retrogene
retro_dord_486,
Equus caballus ENSECAG00000018880 possible_ortholog 1 retrogene
retro_ecab_152,
Felis catus ENSFCAG00000027366 possible_ortholog 1 retrogene
retro_fcat_763,
Myotis lucifugus ENSMLUG00000001667 possible_ortholog 1 retrogene
retro_mluc_1341,
Monodelphis domestica ENSMODG00000007651 ortholog_one2many 1 retrogene
retro_mdom_1018,
Mus musculus ENSMUSG00000020326 ortholog_one2many 1 retrogene
retro_mmus_1534,
Otolemur garnettii ENSOGAG00000007639 possible_ortholog 1 retrogene
retro_ogar_2452,
Pongo abelii ENSPPYG00000016016 ortholog_one2many 1 retrogene
retro_pabe_3373,
Pteropus vampyrus ENSPVAG00000017902 possible_ortholog 1 retrogene
retro_pvam_1027,
Sarcophilus harrisii ENSSHAG00000007465 ortholog_one2many 2 retrogenes
retro_shar_328, retro_shar_490,
Vicugna pacos ENSVPAG00000008340 possible_ortholog 1 retrogene
retro_vpac_351,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_512 77.51 70.17
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2. retro_ocun_615 96.61 100.00
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3. retro_ocun_1287 74.28 91.86
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Download FASTA sequences of all ENSOCUG00000002129 retrocopies