RetrogeneDB ID: | retro_cfam_1657 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 4:42203861..42204744(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCNG1 | ||
Ensembl ID: | ENSCAFG00000017207 | ||
Aliases: | None | ||
Description: | cyclin G1 [Source:HGNC Symbol;Acc:1592] |
Percent Identity: | 95.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MIEVLTTTESQKLLHQLNALLEQESRCQPKVCGLRLIESAHDNGLRMTARLRDFEVKDLLSLTQFFGFDT |
MIEVLTT.ESQKLLHQLNALLEQESRCQPKVC.LRLIESAHDNGLRMTARLRDFEVKDLLSLTQFFGFDT | |
Retrocopy | MIEVLTT-ESQKLLHQLNALLEQESRCQPKVCSLRLIESAHDNGLRMTARLRDFEVKDLLSLTQFFGFDT |
Parental | ETFSLAVNLLDRFLSKMKVQPKHLGCVGLSCFYLAVKSIEEERNVPLATDLIRISQYRFTVSDLMRMEKI |
ETFSLAVNLLDRFLSKMKVQPKHLGCVGLSCFYLAVKSIEEERNVPLATDLIRISQYRFTVS.LMRMEKI | |
Retrocopy | ETFSLAVNLLDRFLSKMKVQPKHLGCVGLSCFYLAVKSIEEERNVPLATDLIRISQYRFTVSNLMRMEKI |
Parental | VLEKVCWKVKATTAFQFLQLY-YSLIQENLPIERKNSLNFERLEAQLKACHCRIIFSKAKPSVLALSIIA |
.LEKVC.KVKATTAFQFLQLY..SLIQENLPIERKNSLNFERLE.QLKACHCRIIFSKAKPSVLALSIIA | |
Retrocopy | ILEKVC*KVKATTAFQFLQLY>NSLIQENLPIERKNSLNFERLEVQLKACHCRIIFSKAKPSVLALSIIA |
Parental | LEIQAQKFVELTEGIECLQTHSKINGRDLTFWQELVSKCLTEYSSNKCSKPNVQKLKWIVSGRTARQLKH |
LEI.AQKFVELTEGIECLQ.HSKINGRDLTFWQELVSKCLTEYSSNKCSK.NVQKLKWIVSGRTAR.LKH | |
Retrocopy | LEIEAQKFVELTEGIECLQIHSKINGRDLTFWQELVSKCLTEYSSNKCSKANVQKLKWIVSGRTAR*LKH |
Parental | SYYRITHLPTIPEMVP |
SYYRITHLPT.PEMVP | |
Retrocopy | SYYRITHLPTTPEMVP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .08 RPM | 40 .53 RPM |
SRP017611_brain | 0 .16 RPM | 30 .96 RPM |
SRP017611_kidney | 3 .10 RPM | 265 .27 RPM |
SRP017611_liver | 0 .00 RPM | 17 .04 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006607 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000017207 | 1 retrocopy |
retro_cfam_1657 ,
|
Callithrix jacchus | ENSCJAG00000015341 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000014293 | 1 retrocopy | |
Equus caballus | ENSECAG00000018880 | 1 retrocopy | |
Felis catus | ENSFCAG00000027366 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001667 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007651 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020326 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002129 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000007639 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017902 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000007465 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000008340 | 1 retrocopy |