RetrogeneDB ID: | retro_btau_97 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 8:86579143..86579452(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000009073 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CSTB | ||
Ensembl ID: | ENSBTAG00000000524 | ||
Aliases: | None | ||
Description: | Cystatin-B [Source:UniProtKB/Swiss-Prot;Acc:P25417] |
Percent Identity: | 72.45 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MMCGGTSATQPATAETQAIADKVKSQLEEKENKKFPVFKALEFKSQLVAGKNYFIKVQVDEDDFVHIRVF |
MMCG.....Q.A.AE.QAIADKVKS.LEEKENKKF.VF.A.EFKSQ.VAG...F.KVQ.D.DDFVHI.VF | |
Retrocopy | MMCGAPPTKQLAAAEIQAIADKVKSPLEEKENKKFLVFNAVEFKSQGVAGRTFFTKVQMD-DDFVHIQVF |
Parental | ESLPHENKPVALTSYQTNKSRHDELTYF |
ESLP.ENKPVALTSYQ..K.R.DE.T.F | |
Retrocopy | ESLPQENKPVALTSYQIHKGRQDEVTCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 7 .93 RPM |
ERP005899_muscle | 0 .00 RPM | 42 .86 RPM |
SRP017611_brain | 0 .00 RPM | 16 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 33 .07 RPM |
SRP017611_liver | 0 .00 RPM | 11 .33 RPM |
SRP030211_testis | 0 .48 RPM | 12 .54 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000000524 | 1 retrocopy |
retro_btau_97 ,
|
Loxodonta africana | ENSLAFG00000002664 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000022457 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012303 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006101 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000007022 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001201 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017952 | 3 retrocopies |