RetrogeneDB ID: | retro_shar_699 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL857565.1:61825..62134(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CSTB | ||
Ensembl ID: | ENSSHAG00000017952 | ||
Aliases: | None | ||
Description: | cystatin B (stefin B) [Source:HGNC Symbol;Acc:2482] |
Percent Identity: | 59.81 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | ASRFAKMMCGGTSATKPATAETQR-IADEVKTQLEAKE-NRKFPVFKTMEFKSQVVAGTNYFIKVHVGEE |
A...A.MM..G.SA.KP..AE.........KTQ.E.K..NRKFP.FKT.EFKS..VAGT.YFIKVH.GEE | |
Retrocopy | ATEHARMMWEGISAVKPDMAEMHK<VVEQIKTQFEEKG<NRKFPIFKTKEFKSYLVAGTHYFIKVHIGEE |
Parental | -EFIHMRVFESLPHENKPLLLSSYQTNKTKDDELAYF |
..F.HM.VF....HENKPL.L..YQTNKT..DEL.YF | |
Retrocopy | <KFMHM*VFKNCSHENKPLDLFGYQTNKTNNDELVYF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000000524 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000002664 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000022457 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012303 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006101 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000007022 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001201 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017952 | 3 retrocopies |
retro_shar_229, retro_shar_623, retro_shar_699 ,
|