RetrogeneDB ID: retro_mluc_379

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429827:3569186..3569498(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023956
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000022457
• Aliases: None
• Description: None

Sequence

>retro_mluc_379
ATGAGTGCTACCAGGAGGCTGATTGGCGGGCCCTCCGAAACCCGGCCCGCCACGGCCGAGATCCAGGCCATCGCCGACAA
GGTGAAGTCCCAGCTGGAGGAGAAGGAAAACAAGAAGTACCCCACTTTCAAGGCCATGGAGTACAAGAGCCAGGTGGTTG
CAGGGATTAACTACTTCATCAAGGTTCAAGTTGAAGATGATGACTTCGTGCACATTCGAGTGTTTGAAAGTCTCCCTCAT
GAAAACAAGGCCTTGGCCTTGCACAATTATCAGACCAACAAGACCAAGCAGGACGAGCTCGCCTATTTCTAG

Alignment

ORF - retro_mluc_379 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.23 %
• Parental protein coverage: 99.04 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSAPRVLCGGPSETRAATAEIQAIADKVKSQLEEKENKKYPTFKAMEYKSQVVAGTNYFIKVQVADDDFV
          MSA.R.L.GGPSETR.ATAEIQAIADKVKSQLEEKENKKYPTFKAMEYKSQVVAG.NYFIKVQV.DDDFV
Retrocopy MSATRRLIGGPSETRPATAEIQAIADKVKSQLEEKENKKYPTFKAMEYKSQVVAGINYFIKVQVEDDDFV

Parental  HLRVFQSLPHENKALALHNYQTNKTKQDELAYF
          H.RVF.SLPHENKALALHNYQTNKTKQDELAYF
Retrocopy HIRVFESLPHENKALALHNYQTNKTKQDELAYF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_379 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000000524	1 retrocopy	retro_btau_97,
Loxodonta africana	ENSLAFG00000002664	1 retrocopy	retro_lafr_370,
Myotis lucifugus	ENSMLUG00000022457	1 retrocopy	retro_mluc_379 ,
Macaca mulatta	ENSMMUG00000012303	1 retrocopy	retro_mmul_1609,
Otolemur garnettii	ENSOGAG00000006101	2 retrocopies	retro_ogar_3274, retro_ogar_3275,
Pteropus vampyrus	ENSPVAG00000007022	1 retrocopy	retro_pvam_1089,
Rattus norvegicus	ENSRNOG00000001201	1 retrocopy	retro_rnor_551,
Sarcophilus harrisii	ENSSHAG00000017952	3 retrocopies	retro_shar_229, retro_shar_623, retro_shar_699,