RetrogeneDB ID: | retro_mmul_1609 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:60878620..60878869(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CSTB | ||
Ensembl ID: | ENSMMUG00000012303 | ||
Aliases: | CSTB, cystatin-B | ||
Description: | cystatin-B [Source:RefSeq peptide;Acc:NP_001244627] |
Percent Identity: | 70.93 % |
Parental protein coverage: | 87.76 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | CGAPSAVQPATAETQDIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHLRVFKS |
C.AP...Q.A..ETQDI.DQVR.QLEEKE.KKFPVFKAVSFK...V..TN.FIK...GDEDF.HL.VF.S | |
Retrocopy | CWAPLGTQLASRETQDIVDQVRAQLEEKE-KKFPVFKAVSFKR--VVRTNCFIKMYIGDEDFIHLGVFRS |
Parental | LPHENKPLTLSDYQTN |
LPH.NKPL.LS.YQTN | |
Retrocopy | LPHKNKPLILSNYQTN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 42 .80 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 54 .10 RPM |
SRP007412_cerebellum | 0 .00 RPM | 25 .57 RPM |
SRP007412_heart | 0 .00 RPM | 32 .39 RPM |
SRP007412_kidney | 0 .00 RPM | 62 .32 RPM |
SRP007412_liver | 0 .00 RPM | 33 .37 RPM |
SRP007412_testis | 0 .00 RPM | 13 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000000524 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000002664 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000022457 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012303 | 1 retrocopy |
retro_mmul_1609 ,
|
Otolemur garnettii | ENSOGAG00000006101 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000007022 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001201 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017952 | 3 retrocopies |