RetrogeneDB ID: | retro_pvam_1089 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_2800:24873..25152(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CSTB | ||
Ensembl ID: | ENSPVAG00000007022 | ||
Aliases: | None | ||
Description: | cystatin B (stefin B) [Source:HGNC Symbol;Acc:2482] |
Percent Identity: | 73.4 % |
Parental protein coverage: | 94.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GTSATQPATANIQDITDQVKSQLEQKTKKKYPIFKAVEFKSQTVAGTNYFIKVQVGDNDFIHIRVFESLP |
G.SAT.PATA.I..ITDQVKSQLE.K...KY..FKAVEFKSQ.V.GTNYFIKVQV.D.D.IHIRVFE.LP | |
Retrocopy | GCSATHPATAEI*PITDQVKSQLE-KGNRKYSVFKAVEFKSQLVVGTNYFIKVQVDDDDVIHIRVFENLP |
Parental | QENRPVALCDYQTDKSRSDELDYF |
..N.P.AL.DY.TDKSR.DEL.YF | |
Retrocopy | LANMPLALHDYLTDKSRRDELTYF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000000524 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000002664 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000022457 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012303 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006101 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000007022 | 1 retrocopy |
retro_pvam_1089 ,
|
Pteropus vampyrus | ENSPVAG00000012705 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000001201 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017952 | 3 retrocopies |