RetrogeneDB ID: | retro_cfam_1014 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 21:26708893..26709292(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AKIRIN2 | ||
Ensembl ID: | ENSCAFG00000003082 | ||
Aliases: | None | ||
Description: | akirin 2 [Source:HGNC Symbol;Acc:21407] |
Percent Identity: | 91.73 % |
Parental protein coverage: | 65.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DVSSRLTTEQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSEAQPHAFLLSGPASPGTSSATSSPLKKEQ |
D.......EQ.LYNIKQEYKRMQKRRHLETSFQQTDPCCTSEAQPHAFLLSGPASPGTSSATSSPLKKEQ | |
Retrocopy | DSDTNSESEQLLYNIKQEYKRMQKRRHLETSFQQTDPCCTSEAQPHAFLLSGPASPGTSSATSSPLKKEQ |
Parental | PLFTLRQVGMICERLLKEREEKVREEYEEILNTKLAEQYDAFVKFTHDQIMRRYGEQPASYVS |
PLFTLRQVGMICERLLKEREEKVREEYEEILNTKLAEQYDAFVKF.HDQIM.RY.EQPASYVS | |
Retrocopy | PLFTLRQVGMICERLLKEREEKVREEYEEILNTKLAEQYDAFVKFMHDQIMQRYREQPASYVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 23 .35 RPM |
SRP017611_brain | 0 .00 RPM | 18 .10 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .59 RPM |
SRP017611_liver | 0 .00 RPM | 4 .13 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003082 | 1 retrocopy |
retro_cfam_1014 ,
|
Canis familiaris | ENSCAFG00000003186 | 4 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000012160 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000769 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000000549 | 1 retrocopy | |
Homo sapiens | ENSG00000135334 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000002448 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002824 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016831 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018409 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008288 | 1 retrocopy | |
Sorex araneus | ENSSARG00000006084 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011555 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000004307 | 1 retrocopy |