RetrogeneDB ID: | retro_sara_701 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_260275:94408..94779(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AKIRIN2 | ||
Ensembl ID: | ENSSARG00000006084 | ||
Aliases: | None | ||
Description: | akirin 2 [Source:HGNC Symbol;Acc:21407] |
Percent Identity: | 81.1 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | QILYNIKQEYKRMQKRRHLE-TSFQQTDPCCTSDAQPHAFLLSGPVSPGTSSATSSPLKKEQPLFTLRQV |
QILYN.K.EYKRMQKRRHLE.TSFQQTD.C.TSDAQPHAFLL.GP.SPGTS.ATSSPLKKEQPLF.L.Q. | |
Retrocopy | QILYNTKREYKRMQKRRHLE<TSFQQTDSCRTSDAQPHAFLLIGPASPGTSPATSSPLKKEQPLFALWQF |
Parental | GMICERLLK-EREEKVREEYEEILNTKLAEQYDAFVKFTHDQIM-RRYGEQPASYVS |
GMI.ERLLK..REEKV.E.YEEILN.KL.EQYDAFVKFTHDQIM...Y.E.PA.YVS | |
Retrocopy | GMIHERLLK<KREEKV*E*YEEILNAKLTEQYDAFVKFTHDQIM>DNYEE*PANYVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003082 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012160 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000769 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000000549 | 1 retrocopy | |
Homo sapiens | ENSG00000135334 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000002448 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002824 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016831 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018409 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008288 | 1 retrocopy | |
Sorex araneus | ENSSARG00000006084 | 1 retrocopy |
retro_sara_701 ,
|
Sarcophilus harrisii | ENSSHAG00000011555 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000004307 | 1 retrocopy |