RetrogeneDB ID: | retro_shar_363 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841491.1:1418444..1418765(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AKIRIN2 | ||
Ensembl ID: | ENSSHAG00000011555 | ||
Aliases: | None | ||
Description: | akirin 2 [Source:HGNC Symbol;Acc:21407] |
Percent Identity: | 88.79 % |
Parental protein coverage: | 95.54 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MQKRRHLETSFQQTDACCSSDSQPHAFLLNGPASPGTSSAASSPLKKEQPLFTLRQVGMICERLLKEREE |
MQKRRHLETSFQQT.ACCSSDSQP.AFLLNGPASPGTSSAASSPLKKEQPLF.LRQVG.ICE.LLKE.EE | |
Retrocopy | MQKRRHLETSFQQTNACCSSDSQPYAFLLNGPASPGTSSAASSPLKKEQPLFILRQVGIICEHLLKECEE |
Parental | KVREEYEEILTTKLAEQYDAFVKFTHDQIMRRYGEQP |
KV.E.YEEILTTKLAEQYDAFVKF.H.QIM..YGEQP | |
Retrocopy | KVCEGYEEILTTKLAEQYDAFVKFMHEQIM**YGEQP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003082 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012160 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000769 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000000549 | 1 retrocopy | |
Homo sapiens | ENSG00000135334 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000002448 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002824 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016831 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018409 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008288 | 1 retrocopy | |
Sorex araneus | ENSSARG00000006084 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011555 | 2 retrocopies |
retro_shar_363 , retro_shar_579,
|
Sarcophilus harrisii | ENSSHAG00000017458 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000004307 | 1 retrocopy |