RetrogeneDB ID: | retro_hsap_2991 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:150711143..150711452(+) | ||
Located in intron of: | ENSG00000234828 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000251482 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AKIRIN2 | ||
Ensembl ID: | ENSG00000135334 | ||
Aliases: | AKIRIN2, C6orf166, FBI1, dJ486L4.2 | ||
Description: | akirin 2 [Source:HGNC Symbol;Acc:21407] |
Percent Identity: | 83.18 % |
Parental protein coverage: | 51.72 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | ETSFQQTDPCCTSDAQPHAFLLSGPASPGTSSAASSPLKKEQPLFTLRQVGMICERLLKEREEKVREEYE |
ETSFQ.TD.CCTSDA..HAFLLSG.ASPGTSSAASSPLKKEQPLFTL.QVGMICE..LKE.EEKV.EE.E | |
Retrocopy | ETSFQDTDLCCTSDA--HAFLLSGSASPGTSSAASSPLKKEQPLFTLWQVGMICEH*LKEHEEKVWEEHE |
Parental | E-ILNTKLAEQ-YDAFVKFTHDQIMRRYGEQPASYVS |
E.ILNTKLAEQ..DA.VKFTHDQIM..YGE.PASYVS | |
Retrocopy | E<ILNTKLAEQ>NDASVKFTHDQIM**YGEEPASYVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 37 .15 RPM |
bodymap2_adrenal | 0 .00 RPM | 41 .23 RPM |
bodymap2_brain | 0 .00 RPM | 51 .43 RPM |
bodymap2_breast | 0 .00 RPM | 69 .61 RPM |
bodymap2_colon | 0 .00 RPM | 22 .37 RPM |
bodymap2_heart | 0 .00 RPM | 22 .54 RPM |
bodymap2_kidney | 0 .00 RPM | 37 .04 RPM |
bodymap2_liver | 0 .00 RPM | 19 .05 RPM |
bodymap2_lung | 0 .00 RPM | 43 .74 RPM |
bodymap2_lymph_node | 0 .00 RPM | 43 .09 RPM |
bodymap2_ovary | 0 .00 RPM | 40 .48 RPM |
bodymap2_prostate | 0 .00 RPM | 25 .55 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 84 .17 RPM |
bodymap2_testis | 0 .00 RPM | 49 .06 RPM |
bodymap2_thyroid | 0 .00 RPM | 46 .49 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 70 .50 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2023 |
Gorilla gorilla | retro_ggor_2071 |
Pongo abelii | retro_pabe_2477 |
Macaca mulatta | retro_mmul_1914 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003082 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012160 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000769 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000000549 | 1 retrocopy | |
Homo sapiens | ENSG00000135334 | 1 retrocopy |
retro_hsap_2991 ,
|
Homo sapiens | ENSG00000174574 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000002448 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002824 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016831 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018409 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008288 | 1 retrocopy | |
Sorex araneus | ENSSARG00000006084 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011555 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000004307 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |