RetrogeneDB ID: | retro_cfam_1086 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 22:50435386..50436327(-) | ||
Located in intron of: | ENSCAFG00000005857 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRPDL | ||
Ensembl ID: | ENSCAFG00000008940 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.97 % |
Parental protein coverage: | 74.76 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | TARQHP-PADNSAAMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVV |
T.R..P.PA..SA.MEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVV | |
Retrocopy | TLRRRP<PAASSATMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVV |
Parental | DCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTS |
DCTI.T.PVTGR.RGFGFVLFKDAASVDKVLELKEHKLDGKLI.PKRAKALKGKEPP.K.FVGGLSPDT. | |
Retrocopy | DCTIETVPVTGRPRGFGFVLFKDAASVDKVLELKEHKLDGKLINPKRAKALKGKEPPRKIFVGGLSPDTC |
Parental | EEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYR |
EEQIKEYFGAFGEIE.IELPMDTKTNERRGFCFITYTDEEPVK.LLESRYHQIGSGKCEIKVAQPKEVYR | |
Retrocopy | EEQIKEYFGAFGEIEYIELPMDTKTNERRGFCFITYTDEEPVKELLESRYHQIGSGKCEIKVAQPKEVYR |
Parental | QQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYG |
QQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYG | |
Retrocopy | QQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYG |
Parental | NYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY |
NYGYGQGY.DYSGQQSTYGKASRGGG..QNNYQPY | |
Retrocopy | NYGYGQGYVDYSGQQSTYGKASRGGGSYQNNYQPY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 8 .15 RPM | 224 .53 RPM |
SRP017611_brain | 5 .32 RPM | 111 .78 RPM |
SRP017611_kidney | 3 .90 RPM | 75 .55 RPM |
SRP017611_liver | 3 .26 RPM | 57 .94 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000000241 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000006580 | 16 retrocopies | |
Canis familiaris | ENSCAFG00000008940 | 1 retrocopy |
retro_cfam_1086 ,
|
Canis familiaris | ENSCAFG00000013497 | 12 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000000160 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000003275 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000000968 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008612 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014452 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000014753 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000008636 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002501 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000002270 | 1 retrocopy |