Parental gene:

HNRNPA3, ENSCAFG00000013497

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941]
Organism:Dog (Canis familiaris)
Coordinates:36:20974647..20979872(+)


>ENSCAFG00000013497
ATGGAGGTAAAACCGCCGCCCGGTCGCCCCCAGCCCGACTCCGGCCGTCGCCGCCGCCGCCGGGGGGAGGAGGGCCATGA
TCCAAAGGAACCCGAGCAGTTGAGAAAACTGTTCATTGGTGGTTTGAGCTTTGAAACTACGGATGATAGTTTAAGAGAAC
ATTTTGAAAAATGGGGCACACTTACAGATTGTGTGGTAATGAGAGACCCCCAAACAAAACGTTCCAGGGGTTTTGGTTTT
GTGACTTACTCTTGTGTTGAAGAGGTGGATGCAGCAATGTGTGCCCGACCACACAAGGTTGATGGGCGTGTAGTGGAACC
AAAGAGAGCTGTTTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATCTAACAGTGAAGAAAATTTTTGTTGGTGGTATTA
AAGAAGATACAGAAGAATATAATTTGAGAGACTACTTTGAAAAGTATGGCAAAATTGAAACCATAGAAGTTATGGAAGAC
CGGCAGAGTGGAAAAAAGAGAGGATTTGCTTTTGTAACTTTCGATGATCATGATACAGTTGATAAAATTGTTGTTCAGAA
ATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTCTGCTGGATCGCAAA
GAGGTCGTGGAGGTGGATCTGGCAACTTCATGGGTCGTGGAGGAAACTTTGGAGGTGGTGGTAATTTTGGCCGTGGTGGA
AACTTTGGGGGAAGAGGAGGCTATGGTGGTGGAGGTGGTGGCAGCAGAGGTAGTTATGGAGGAGGTGATGGTGGATATAA
TGGATTTGGAGGTGATGGTGGCAACTATGGTGGTGGTCCTGGTTATAGTAGTAGAGGAGGCTATGGTGGTGGTGGACCAG
GATATGGAAACCAAGGAGGCGGATATGGTGGTGGTGGTGGAGGATACGATGGTTACAATGAAGGAGGAAATTTTGGAGGT
GGTAACTATGGTGGTGGTGGGAACTATAATGATTTTGGAAATTATAGTGGACAACAGCAATCAAATTATGGACCCATGAA
AGGGGGCAGTTTTGGTGGAAGAAGCTCGGGCAGTCCCTATGGTGGTGGTTATGGATCTGGTGGTGGAAGTGGTGGATATG
GTAGCAGAAGGTTCTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 173 .46 RPM
SRP017611_brain 60 .97 RPM
SRP017611_kidney 51 .77 RPM
SRP017611_liver 49 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000000241 other_paralog 2 retrogenes
retro_cfam_408, retro_cfam_412,
Canis familiaris ENSCAFG00000006580 within_species_paralog 16 retrogenes
retro_cfam_1080, retro_cfam_1081, retro_cfam_1170, retro_cfam_1323, retro_cfam_1616, retro_cfam_1844, retro_cfam_2017, retro_cfam_2128, retro_cfam_360, retro_cfam_564, retro_cfam_702, retro_cfam_803, retro_cfam_839, retro_cfam_855, retro_cfam_892, retro_cfam_937,
Canis familiaris ENSCAFG00000008940 other_paralog 1 retrogene
retro_cfam_1086,
Ficedula albicollis ENSFALG00000003215 ortholog_one2one 1 retrogene
retro_falb_15,
Gallus gallus ENSGALG00000009250 ortholog_one2one 1 retrogene
retro_ggal_10,
Macropus eugenii ENSMEUG00000013622 ortholog_one2one 6 retrogenes
retro_meug_1264, retro_meug_1760, retro_meug_1913, retro_meug_238, retro_meug_470, retro_meug_56,
Mus musculus ENSMUSG00000059005 possible_ortholog 6 retrogenes
retro_mmus_133, retro_mmus_1359, retro_mmus_1409, retro_mmus_210, retro_mmus_3635, retro_mmus_60,
Oryctolagus cuniculus ENSOCUG00000002743 possible_ortholog 2 retrogenes
retro_ocun_994, retro_ocun_995,
Otolemur garnettii ENSOGAG00000028132 ortholog_one2one 7 retrogenes
retro_ogar_1869, retro_ogar_1924, retro_ogar_2222, retro_ogar_2590, retro_ogar_3215, retro_ogar_600, retro_ogar_814,
Pelodiscus sinensis ENSPSIG00000003011 ortholog_one2one 1 retrogene
retro_psin_16,
Pteropus vampyrus ENSPVAG00000010380 ortholog_one2one 2 retrogenes
retro_pvam_1077, retro_pvam_326,
Sus scrofa ENSSSCG00000015988 ortholog_one2one 6 retrogenes
retro_sscr_1110, retro_sscr_1152, retro_sscr_391, retro_sscr_621, retro_sscr_764, retro_sscr_927,
Xenopus tropicalis ENSXETG00000001806 ortholog_one2one 1 retrogene
retro_xtro_11,
Xiphophorus maculatus ENSXMAG00000000439 ortholog_one2one 1 retrogene
retro_xmac_2,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_65 54.84 79.37
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2. retro_cfam_265 80.80 64.29
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3. retro_cfam_272 91.64 93.92
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4. retro_cfam_400 81.73 77.78
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5. retro_cfam_625 73.98 51.06
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6. retro_cfam_836 74.90 63.23
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7. retro_cfam_1214 89.05 53.17
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8. retro_cfam_1326 87.74 93.92
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9. retro_cfam_1388 94.00 52.91
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10. retro_cfam_1548 64.74 79.63
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11. retro_cfam_1690 80.10 99.74
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12. retro_cfam_1816 81.67 80.16
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Download FASTA sequences of all ENSCAFG00000013497 retrocopies