RetrogeneDB ID: | retro_cfam_1080 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 22:41346062..41346838(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1L2 | ||
Ensembl ID: | ENSCAFG00000006580 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A1-like 2 [Source:HGNC Symbol;Acc:27067] |
Percent Identity: | 72.69 % |
Parental protein coverage: | 68.1 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VD |
.SKSESPKEPEQL.KLF.GGLSFETT.ES.RSHFEQWG.LTD.V.MRDPNTK.SRGFGFVTYATVEE.VD | |
Retrocopy | LSKSESPKEPEQLPKLFLGGLSFETTGESPRSHFEQWGMLTDSVLMRDPNTKPSRGFGFVTYATVEE<VD |
Parental | AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD |
AAMNARPHKVDG.VVEPKRAVSREDSQRP.AHLT.KKIFVGGIK.DTEE.HLRDYF.QYGKIEVIEIMTD | |
Retrocopy | AAMNARPHKVDGSVVEPKRAVSREDSQRPCAHLTLKKIFVGGIK*DTEENHLRDYFKQYGKIEVIEIMTD |
Parental | RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGG |
.GSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC.VRKALSKQEMAS..................G.G | |
Retrocopy | PGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCVVRKALSKQEMASDXXXXXXXXXXXXXXXXSGDG |
Parental | FGG----NDNFGRGGNFSGRGGFGG-SRGGGGYGGSGDGYNGFGNDGGYG |
..G......NFG.GGN....G.....S...G...G...G....G..GG.G | |
Retrocopy | YNGFGNDGNNFGGGGNYNDFGNYNNQSSNFGPMKGRNFGSRSSGPEGGGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 309 .95 RPM |
SRP017611_brain | 0 .00 RPM | 85 .58 RPM |
SRP017611_kidney | 0 .00 RPM | 187 .02 RPM |
SRP017611_liver | 0 .00 RPM | 97 .89 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000000241 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000006580 | 16 retrocopies | |
Canis familiaris | ENSCAFG00000008940 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000013497 | 12 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000009228 | 7 retrocopies | |
Macaca mulatta | ENSMMUG00000012989 | 5 retrocopies | |
Mustela putorius furo | ENSMPUG00000004620 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005735 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000013350 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000029707 | 3 retrocopies | |
Oreochromis niloticus | ENSONIG00000012248 | 1 retrocopy |