RetrogeneDB ID: | retro_cfam_1816 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 6:36827429..36828355(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000019198 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA3 | ||
Ensembl ID: | ENSCAFG00000013497 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941] |
Percent Identity: | 81.67 % |
Parental protein coverage: | 80.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM |
EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTK.SRGFGFV.YSCVEEVDAAM | |
Retrocopy | EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKHSRGFGFVSYSCVEEVDAAM |
Parental | CARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQS |
CARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQS | |
Retrocopy | CARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQS |
Parental | GKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGG |
GKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFG.G | |
Retrocopy | GKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFG-G |
Parental | GNFGRGGNFG-GRGGYGGGGG--GSRGS-YGGGDGGYNGF---GGDGGNYGGGPGYSSRGGYGG-GGPGY |
G........G.GRGGYGGGG...G..GS.YGGG.GGY.G....G..GGNYGGG..Y...G.Y.G.....Y | |
Retrocopy | GKIWPWWKLG<GRGGYGGGGPGYGNHGSGYGGGGGGYDGYNEGGNFGGNYGGGGNYNDFGNYSGQQQSNY |
Parental | GNQGGGYGGGGGGYDGYNEGGNFGGGNYGGG |
G...GG..GG......Y..G...GGG..G.G | |
Retrocopy | GPMKGGSFGGRSSGSPYGGGYGSGGGSGGYG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 4 .16 RPM | 173 .46 RPM |
SRP017611_brain | 1 .03 RPM | 60 .97 RPM |
SRP017611_kidney | 1 .32 RPM | 51 .77 RPM |
SRP017611_liver | 0 .87 RPM | 49 .16 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000000241 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000006580 | 16 retrocopies | |
Canis familiaris | ENSCAFG00000008940 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000013497 | 12 retrocopies | |
Ficedula albicollis | ENSFALG00000003215 | 1 retrocopy | |
Gallus gallus | ENSGALG00000009250 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013622 | 6 retrocopies | |
Mus musculus | ENSMUSG00000059005 | 6 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002743 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000028132 | 7 retrocopies | |
Pelodiscus sinensis | ENSPSIG00000003011 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000010380 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000015988 | 6 retrocopies | |
Xenopus tropicalis | ENSXETG00000001806 | 1 retrocopy | |
Xiphophorus maculatus | ENSXMAG00000000439 | 1 retrocopy |