Parental gene: | HNRNPA1L2, ENSCAFG00000006580 |
| Aliases: | None |
| Description: | heterogeneous nuclear ribonucleoprotein A1-like 2 [Source:HGNC Symbol;Acc:27067] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 27:1016289..1020000(-) |
>ENSCAFG00000006580
CATCCAATCAGAGACGCTCAGGGGCGGAGTCTACCAATGCCTAAAGCGAGGAGGCGGGATAAAAAAGCGAGGCCGAAGTC
TCCCAAAGAGCCCGAGCAGCTGCGGAAACTCTTCATCGGAGGTTTGAGCTTCGAAACGACCGATGAGAGTCTGAGGAGCC
ATTTTGAGCAATGGGGGACGCTTACGGACTGTGTGGTAATGAGAGACCCCAACACCAAGCGCTCCAGAGGCTTTGGGTTC
GTCACGTACGCCACCGTGGAGGAGGTGGACGCGGCCATGAACGCCCGGCCGCACAAGGTGGACGGAAGAGTCGTGGAACC
AAAGAGGGCTGTCTCCCGAGAAGATTCTCAAAGACCCGGTGCCCACTTAACTGTGAAAAAGATTTTTGTCGGTGGCATTA
AAGAAGACACTGAAGAACATCATCTAAGAGATTATTTTGAACAGTATGGGAAAATCGAAGTGATTGAGATCATGACTGAC
CGAGGCAGTGGCAAAAAGAGAGGTTTCGCTTTTGTAACCTTTGATGACCACGACTCTGTAGACAAGATTGTCATTCAAAA
ATACCATACTGTGAATGGCCACAACTGTGAAGTAAGGAAAGCCCTATCGAAGCAAGAGATGGCTAGTGCTTCGTCCAGCC
AAAGAGGCCGAAGTGGTTCTGGAAACTTTGGTGGTGGTCGTGGAGGTGGTTTTGGTGGGAATGACAACTTTGGTCGTGGA
GGGAACTTCAGTGGTCGAGGTGGCTTCGGTGGCAGTCGAGGTGGTGGTGGATATGGTGGCAGTGGGGATGGCTATAACGG
ATTTGGTAATGACGGTGGTTATGGAGGAGGCGGCCCTGGTTACTCTGGAGGAAGCAGAGGCTATGGAAGTGGTGGACAGG
GTTATGGAAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATGACAGCTATAACAACGGAGGAGGCGGAGGCGGCTAT
GGCGGTGGTAGTGGAAGCAACTTTGGAGGTGGCGGAAGCTATAACGATTTTGGCAATTACAACAATCAATCCTCAAATTT
TGGACCCATGAAAGGAGGAAATTTTGGAGGCAGAAGCTCTGGCCCCTATGGTGGTGGAGGTGGCTATGGCGGTTCCAGCA
GCAGCAGCAGCTATGGCAGTGGCAGAAGGTTTTAA
CATCCAATCAGAGACGCTCAGGGGCGGAGTCTACCAATGCCTAAAGCGAGGAGGCGGGATAAAAAAGCGAGGCCGAAGTC
TCCCAAAGAGCCCGAGCAGCTGCGGAAACTCTTCATCGGAGGTTTGAGCTTCGAAACGACCGATGAGAGTCTGAGGAGCC
ATTTTGAGCAATGGGGGACGCTTACGGACTGTGTGGTAATGAGAGACCCCAACACCAAGCGCTCCAGAGGCTTTGGGTTC
GTCACGTACGCCACCGTGGAGGAGGTGGACGCGGCCATGAACGCCCGGCCGCACAAGGTGGACGGAAGAGTCGTGGAACC
AAAGAGGGCTGTCTCCCGAGAAGATTCTCAAAGACCCGGTGCCCACTTAACTGTGAAAAAGATTTTTGTCGGTGGCATTA
AAGAAGACACTGAAGAACATCATCTAAGAGATTATTTTGAACAGTATGGGAAAATCGAAGTGATTGAGATCATGACTGAC
CGAGGCAGTGGCAAAAAGAGAGGTTTCGCTTTTGTAACCTTTGATGACCACGACTCTGTAGACAAGATTGTCATTCAAAA
ATACCATACTGTGAATGGCCACAACTGTGAAGTAAGGAAAGCCCTATCGAAGCAAGAGATGGCTAGTGCTTCGTCCAGCC
AAAGAGGCCGAAGTGGTTCTGGAAACTTTGGTGGTGGTCGTGGAGGTGGTTTTGGTGGGAATGACAACTTTGGTCGTGGA
GGGAACTTCAGTGGTCGAGGTGGCTTCGGTGGCAGTCGAGGTGGTGGTGGATATGGTGGCAGTGGGGATGGCTATAACGG
ATTTGGTAATGACGGTGGTTATGGAGGAGGCGGCCCTGGTTACTCTGGAGGAAGCAGAGGCTATGGAAGTGGTGGACAGG
GTTATGGAAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATGACAGCTATAACAACGGAGGAGGCGGAGGCGGCTAT
GGCGGTGGTAGTGGAAGCAACTTTGGAGGTGGCGGAAGCTATAACGATTTTGGCAATTACAACAATCAATCCTCAAATTT
TGGACCCATGAAAGGAGGAAATTTTGGAGGCAGAAGCTCTGGCCCCTATGGTGGTGGAGGTGGCTATGGCGGTTCCAGCA
GCAGCAGCAGCTATGGCAGTGGCAGAAGGTTTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 85 .58 RPM |
| SRP017611_kidney | 187 .02 RPM |
| SRP017611_liver | 97 .89 RPM |
| SRP012049_cerebellum | 309 .95 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000000241 | other_paralog | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000008940 | other_paralog | 1 retrogene | |
| Canis familiaris | ENSCAFG00000013497 | within_species_paralog | 12 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000009228 | ortholog_one2many | 7 retrogenes | |
| Macaca mulatta | ENSMMUG00000012989 | ortholog_one2one | 5 retrogenes | |
| Mustela putorius furo | ENSMPUG00000004620 | possible_ortholog | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000005735 | possible_ortholog | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000013350 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000029707 | ortholog_one2many | 3 retrogenes | |
| Oreochromis niloticus | ENSONIG00000012248 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_360 | 97.66 | 68.36 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_564 | 81.20 | 60.86 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_702 | 90.13 | 59.25 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_803 | 91.73 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cfam_839 | 82.19 | 65.95 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cfam_855 | 83.27 | 70.24 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cfam_892 | 77.88 | 54.69 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cfam_937 | 97.32 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_cfam_1080 | 72.69 | 68.10 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_cfam_1081 | 94.74 | 55.50 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_cfam_1170 | 87.50 | 57.37 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_cfam_1323 | 83.77 | 60.32 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_cfam_1616 | 94.65 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_cfam_1844 | 84.06 | 55.23 | Please wait, loading | Please wait, loading | Please wait, loading |
| 15. | retro_cfam_2017 | 87.14 | 64.08 | Please wait, loading | Please wait, loading | Please wait, loading |
| 16. | retro_cfam_2128 | 87.14 | 64.08 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000006580 retrocopies