RetrogeneDB ID: | retro_cfam_1272 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 28:6412038..6412392(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNBP | ||
Ensembl ID: | ENSCAFG00000004320 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris CCHC-type zinc finger, nucleic acid binding protein (CNBP), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001252264] |
Percent Identity: | 67.48 % |
Parental protein coverage: | 67.6 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL-AKDCDL |
MSSN.CFKCG.S..WA.EC.TGGG.G.G.RS.GRGGFTS.R.FQFVS.SLPD.CY.CG.SG.L..K.CDL | |
Retrocopy | MSSNKCFKCGPSSYWAPECSTGGGCGHGTRSHGRGGFTSNRDFQFVSLSLPDTCYHCGKSGYL<SKNCDL |
Parental | QEDVEACYNCGRGGHIAKDCKEPKRER-EQCCYNCGKPGHLARDCDHADEQKC |
Q.D..A..NC.RGG...KDC.EP.RER...C.Y.CGK.GHL..DCDHAD.QKC | |
Retrocopy | QKD--ASCNCTRGGLMIKDCQEPERER>QCC-YHCGKLGHLSHDCDHADKQKC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 281 .52 RPM |
SRP017611_brain | 0 .00 RPM | 156 .16 RPM |
SRP017611_kidney | 0 .00 RPM | 330 .52 RPM |
SRP017611_liver | 0 .00 RPM | 100 .29 RPM |