RetrogeneDB ID: | retro_vpac_548 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_4100:80266..80719(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSVPAG00000008356 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNBP | ||
Ensembl ID: | ENSVPAG00000007138 | ||
Aliases: | None | ||
Description: | CCHC-type zinc finger, nucleic acid binding protein [Source:HGNC Symbol;Acc:13164] |
Percent Identity: | 75.5 % |
Parental protein coverage: | 85.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPRREREQ |
RG...RGR......RG.Q..S..LPDICYRCGESGH....CDL.ED.CYNCGR.GHIAKDC.EP.REREQ | |
Retrocopy | RGGGARGRRARDHGRGAQCCSTTLPDICYRCGESGHHVRNCDLLEDICYNCGRSGHIAKDCVEPKREREQ |
Parental | CCYNCGKPGHLARECDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGH |
CCY.CG.PGHLAR.CDH...QKCYSCGEFGHIQKDCT.VKCYRCGETGH.AINCSKT..VNCYRCGES.H | |
Retrocopy | CCYTCGQPGHLARDCDHQEQQKCYSCGEFGHIQKDCTQVKCYRCGETGHIAINCSKTGVVNCYRCGESRH |
Parental | LARECTIEATA |
LAREC.I..TA | |
Retrocopy | LARECPIKPTA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |