RetrogeneDB ID: | retro_cpor_94 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_26:22982845..22983355(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000004667 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNBP | ||
Ensembl ID: | ENSCPOG00000012816 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.39 % |
Parental protein coverage: | 83.05 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYN |
.R.RG...SD.G.Q..S.S..DICYRCG..GH.AK.CDLQ.D.CY.CG..GHIAKDC.EPK...EQCCY. | |
Retrocopy | ARQRGFRSSDSGPQCSSASQSDICYRCGAAGHYAKNCDLQ-DICYSCGKSGHIAKDCPEPKQQKEQCCYT |
Parental | CGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARE |
C..PGHLARDCD....QKCY.CGE.GHIQKDC..V.CYRCGETGH.A..C.K.SEVNCYRCGE.GH.ARE | |
Retrocopy | CSRPGHLARDCDQRKVQKCYTCGESGHIQKDCAQVRCYRCGETGHMAMSCNKASEVNCYRCGEAGHIARE |
Parental | CTIEATA |
CT.EATA | |
Retrocopy | CTVEATA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 56 .71 RPM |
SRP017611_kidney | 0 .00 RPM | 135 .05 RPM |
SRP017611_liver | 0 .00 RPM | 93 .32 RPM |
SRP040447_lung | 0 .00 RPM | 137 .73 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 234 .44 RPM |