RetrogeneDB ID: | retro_cfam_546 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 13:26999135..26999753(+) | ||
Located in intron of: | ENSCAFG00000001093 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SERBP1 | ||
Ensembl ID: | ENSCAFG00000018538 | ||
Aliases: | None | ||
Description: | SERPINE1 mRNA binding protein 1 [Source:HGNC Symbol;Acc:17860] |
Percent Identity: | 92.72 % |
Parental protein coverage: | 50.61 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQTNSSAAGKQL |
MPGHLQEGF.CVVTNRFDQLFDDESDPFEVLKAAENKKKEAG.G.VGGPGAKS.AQAAAQTNS.AAGKQL | |
Retrocopy | MPGHLQEGFSCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGRGSVGGPGAKSTAQAAAQTNSNAAGKQL |
Parental | RKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQSEGKIIDRRPERRPPRERRFEK |
RKESQKD.KNPLPP.VGV.DKKEETQPPVALKKEGIRRVGRRPD.QLQSEGKIIDRRPER.PPRERRFEK | |
Retrocopy | RKESQKDHKNPLPPNVGVADKKEETQPPVALKKEGIRRVGRRPD*QLQSEGKIIDRRPERGPPRERRFEK |
Parental | PLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDRSSFSH |
PLEEKGEGGEFSVDRPIIDRPIRGRGGLGRG.GGRGRGMGRGDGFDSRGKREFDRHSGSD.S...H | |
Retrocopy | PLEEKGEGGEFSVDRPIIDRPIRGRGGLGRG*GGRGRGMGRGDGFDSRGKREFDRHSGSD*SGQKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .59 RPM | 220 .91 RPM |
SRP017611_brain | 0 .64 RPM | 122 .03 RPM |
SRP017611_kidney | 2 .31 RPM | 195 .54 RPM |
SRP017611_liver | 0 .94 RPM | 104 .93 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018538 | 1 retrocopy |
retro_cfam_546 ,
|
Callithrix jacchus | ENSCJAG00000017440 | 2 retrocopies | |
Homo sapiens | ENSG00000142864 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000010396 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001424 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000025884 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000023560 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000003689 | 4 retrocopies |