RetrogeneDB ID: | retro_hsap_413 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 1:80558025..80558752(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000235756 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SERBP1 | ||
Ensembl ID: | ENSG00000142864 | ||
Aliases: | SERBP1, CHD3IP, HABP4L, PAI-RBP1, PAIRBP1 | ||
Description: | SERPINE1 mRNA binding protein 1 [Source:HGNC Symbol;Acc:17860] |
Percent Identity: | 72.98 % |
Parental protein coverage: | 63.57 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | SNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIID-RRPERR |
SN.AGKQL..ESQKD.K.PL.PS.G.VDKKEETQ....LKKEGIR.VGRRPDQQLQ.EGKII..R...R. | |
Retrocopy | SNMAGKQLCIESQKDHKKPLHPSIGMVDKKEETQVLIVLKKEGIR*VGRRPDQQLQVEGKIIE<RPERRS |
Parental | PPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDR |
P..E.RFEKPLEEKG.GG.FSVDR.IID.PIRGRGGL.R..GG...GMG.GDGFDS.GK.EF.RHSGSDR | |
Retrocopy | P-LEQRFEKPLEEKG-GGKFSVDRLIID*PIRGRGGLRRS*GGCRHGMG*GDGFDSHGKCEFYRHSGSDR |
Parental | SGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDE |
S.LKH.DK.GG...H.WGTVKDELTDL..SNVTE.T..GEE.HPVADTENKE.EVEEVK.EGPKEM.LDE | |
Retrocopy | SVLKHKDKHGGNRPHYWGTVKDELTDLE*SNVTEATSVGEE-HPVADTENKESEVEEVKKEGPKEMILDE |
Parental | WKAIQNKDRA-KVEFNIRKPNEGADGQWKKGFVLHKSK |
.KAI.N...A.KVEFNI.KPNE.A.GQWK...V.HKS. | |
Retrocopy | LKAIENMEWA<KVEFNI*KPNEAAEGQWKMKYVFHKSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 280 .28 RPM |
bodymap2_adrenal | 0 .00 RPM | 259 .94 RPM |
bodymap2_brain | 0 .00 RPM | 141 .41 RPM |
bodymap2_breast | 0 .00 RPM | 247 .26 RPM |
bodymap2_colon | 0 .00 RPM | 385 .44 RPM |
bodymap2_heart | 0 .00 RPM | 165 .85 RPM |
bodymap2_kidney | 0 .00 RPM | 267 .30 RPM |
bodymap2_liver | 0 .00 RPM | 169 .01 RPM |
bodymap2_lung | 0 .00 RPM | 255 .54 RPM |
bodymap2_lymph_node | 0 .00 RPM | 246 .53 RPM |
bodymap2_ovary | 0 .00 RPM | 322 .71 RPM |
bodymap2_prostate | 0 .00 RPM | 279 .30 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 342 .10 RPM |
bodymap2_testis | 0 .00 RPM | 334 .21 RPM |
bodymap2_thyroid | 0 .00 RPM | 388 .79 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 312 .07 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_408 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018538 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017440 | 2 retrocopies | |
Homo sapiens | ENSG00000142864 | 3 retrocopies |
retro_hsap_3056, retro_hsap_413 , retro_hsap_4695,
|
Gorilla gorilla | ENSGGOG00000010396 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001424 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000025884 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000023560 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000003689 | 4 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |