RetrogeneDB ID: | retro_ogar_185 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873687.1:575600..576683(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOGAG00000028259 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SERBP1 | ||
Ensembl ID: | ENSOGAG00000025884 | ||
Aliases: | None | ||
Description: | SERPINE1 mRNA binding protein 1 [Source:HGNC Symbol;Acc:17860] |
Percent Identity: | 79.39 % |
Parental protein coverage: | 76.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIID |
D..E...PP.....E..RR.G.R...QLQGEGK...RRP.RRPPRERR.EKPLEEKGEGGEF...RP... | |
Retrocopy | DAEEPPPPPALPPREAGRRAGGRAEPQLQGEGKTPERRPDRRPPRERRAEKPLEEKGEGGEFPAERPTAE |
Parental | RPIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDRSGLKHEDKRGGSGSHNWGTVKDELTDLD |
RP.RGRGG.GRGRGGRGRG.GR.DG.D.RGKREFDRHSGSDR.GLK.EDKRGGSGSHNWGTV.DELTDLD | |
Retrocopy | RPGRGRGGPGRGRGGRGRGPGRADGLDARGKREFDRHSGSDRAGLKPEDKRGGSGSHNWGTVEDELTDLD |
Parental | QSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKK |
QSN.TEE.P.G.EHPVADTENKENEVEE.KEEGPKEMTLDEWKAIQ.KDRAKVEF..RKPNEGADGQWKK | |
Retrocopy | QSNGTEEPPDGDEHPVADTENKENEVEEDKEEGPKEMTLDEWKAIQSKDRAKVEFTLRKPNEGADGQWKK |
Parental | GFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRGGRPNRGSRTDKS |
GFVLHKSKS..AHAEDSV.D.H.RKPANDITSQLEINFGDLGRP...GRGGRGGRG..GR...G..TD.S | |
Retrocopy | GFVLHKSKSDQAHAEDSVTDRHCRKPANDITSQLEINFGDLGRP---GRGGRGGRG--GRGHGGRPTDQS |
Parental | SASAPDVDDPEAFPAL |
SASAPDVDDPEAFPAL | |
Retrocopy | SASAPDVDDPEAFPAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018538 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017440 | 2 retrocopies | |
Homo sapiens | ENSG00000142864 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000010396 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001424 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000025884 | 1 retrocopy |
retro_ogar_185 ,
|
Pan troglodytes | ENSPTRG00000023560 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000003689 | 4 retrocopies |