RetrogeneDB ID:

retro_chof_1738

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_371878:447..843(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSCHOG00000010042
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_chof_1738
ATGTTGGTCCCCTGCAAGGAGTTGGTCGCCGACCTTGCGGGCTTCACCCATCTGATGGGGTATCTGTTGGAAATTGACCA
CCTTGCAATAGATCTAATTATTTCCACACTGAATATATCTAAGATTCATTACTTCTGTACCAGTTGTCTTGTGCGGATGG
TTGGAAACAATCCATATGCAACTGCAGAAGAAAATTCAGCAGAGCTCAGTACAGATGCCGAAGTTTATTCATTGCCTTCA
AAGAAACTAGTGATTCTTCAGTTAAGATCCATTTTTATTAAGTATAAATCCAAGCCATTCTGTGAAAAACTGCTTTCCTG
GGTAAGAAGTGCTGACTGTGCCAGAGTTGTTCTTTCAAGCAGTCATTCATATCACAGCAATGATCTCCAGCATCGA

ORF - retro_chof_1738 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 80.74 %
Parental protein coverage: 51.14 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMFVPCGESVPDLAGFTLLMPAVSVGNVGQLAIDLIISTLNMSKIGYFYTDCLVPMVGNNPYATAEENSAE
M.VPC.E.V.DLAGFT.LM..........LAIDLIISTLN.SKI.YF.T.CLV.MVGNNPYATAEENSAE
RetrocopyMLVPCKELVADLAGFTHLMGYLL--EIDHLAIDLIISTLNISKIHYFCTSCLVRMVGNNPYATAEENSAE
ParentalLSTNAEVYSLPSQKLVALQLRSIFIKYKSKPFCEKLLSWVRSADCARVVVLSSSHSYHRNDLQLR
LST.AEVYSLPS.KLV.LQLRSIFIKYKSKPFCEKLLSWVRSADCARVV.LSSSHSYH.NDLQ.R
RetrocopyLSTDAEVYSLPSKKLVILQLRSIFIKYKSKPFCEKLLSWVRSADCARVV-LSSSHSYHSNDLQHR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1738 was not experimentally validated.

Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000188551 retrocopy
Choloepus hoffmanni ENSCHOG00000010042 1 retrocopy
retro_chof_1738 ,
Myotis lucifugus ENSMLUG000000177441 retrocopy
Macaca mulatta ENSMMUG000000218551 retrocopy
Nomascus leucogenys ENSNLEG000000090631 retrocopy
Oryctolagus cuniculus ENSOCUG000000050861 retrocopy
Sus scrofa ENSSSCG000000218272 retrocopies



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