RetrogeneDB ID: | retro_sscr_1008 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 8:111419020..111419325(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000009102 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000021827 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.5 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MEKSPCIPEIDDSEFCVRVPGGGITKT-LYDEGCSKGIPMAVLLKFVSEGDNIPDALGLVEYLNEWLQII |
MEKSPCIPEIDDSEF.V.V.GG.ITK..LY..GCSKGIPMA.LLKF.SEGD.IP.ALGLV.YLNEWLQ.I | |
Retrocopy | MEKSPCIPEIDDSEFRVSVRGGVITKC<LYGKGCSKGIPMAILLKFISEGDSIPEALGLVGYLNEWLQLI |
Parental | KPCCEDTTESALPWKMPSSWRLLFGSGLPPALF |
KPC..D.TESALPWKMPSSWRLLFGSGLPPALF | |
Retrocopy | KPCFDDPTESALPWKMPSSWRLLFGSGLPPALF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 2 .65 RPM |
SRP014902_testis | 0 .00 RPM | 3 .39 RPM |
SRP018288_heart | 0 .00 RPM | 10 .56 RPM |
SRP018288_kidney | 0 .00 RPM | 15 .47 RPM |
SRP018288_liver | 0 .00 RPM | 9 .27 RPM |
SRP018288_lung | 0 .00 RPM | 8 .15 RPM |
SRP018856_adipose | 0 .00 RPM | 7 .80 RPM |
SRP035408_brain | 0 .00 RPM | 11 .56 RPM |
SRP035408_liver | 0 .00 RPM | 13 .15 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018855 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000010042 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000017744 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021855 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009063 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005086 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000021827 | 2 retrocopies |
retro_sscr_1008 , retro_sscr_763,
|