RetrogeneDB ID: retro_mluc_2496

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430557:25494..26076(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PSMG2
• Ensembl ID: ENSMLUG00000017744
• Aliases: None
• Description: None

Sequence

>retro_mluc_2496
ATGTCTGTTCCCTGCGGTGAGTCGGCCTGCGGCCTCGCGGGTTTCACGCTCCCGATGCCGGCAGTATCCGTTGGAAATGT
TGGCCAGCTTGCAATAGATCTGATTATTTCTACATGGAATATGTGTAAAATTGGTTACTTCTATACCGATTGTCTTGTGC
CGATGGTTGGAAATAACCCATATGCAACATCAGAAGAAAATTCAACAGAACTCAGCGTAAATGCTGAAGTATATTCATTG
CCTTCAAAGAAGCTAGTGGTTCTTCAGTTAAGATCCATTTTTATTAAGTATAAATCAGAGCCATTCTGTGAAAAACTGCT
TTCGTGGGTGAAAAGTAGTAACTGTGCCAAAGTTATTGTTCTTTCGAGCCGTCATTCAGATCCCCGTAATGAGCTACAAC
CTCCCAGTACTCCCTTTAGCTGTCTACTTACACCTTCCCTGCAAAGAAGTATTCAAAATAAAATAAAAAACCTTAACTGG
GAAGAAATGGAAAAAAGCCCATGCATTCCTGAAATAAGTGATTCTGAATCTTGCGTCCGTATACCTGGAGGAGGCATCAC
AAAAACACTCTATGATGAAGGA

Alignment

ORF - retro_mluc_2496 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.51 %
• Parental protein coverage: 73.48 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MFVPCGESACDLAGFTLLMPAVSVGNVGQLAIDLIISTLNMCKIGYFYTDCLVPMVGNNPYATSEENSTE
          M.VPCGESAC.LAGFTL.MPAVSVGNVGQLAIDLIIST.NMCKIGYFYTDCLVPMVGNNPYATSEENSTE
Retrocopy MSVPCGESACGLAGFTLPMPAVSVGNVGQLAIDLIISTWNMCKIGYFYTDCLVPMVGNNPYATSEENSTE

Parental  LSINAEVYSLPSKKLVVLQLRSIFIKYKSKPFCEKLLSWVKSSNCAKVIVLSSSHSYHRNDLQLRSTPFR
          LS.NAEVYSLPSKKLVVLQLRSIFIKYKS.PFCEKLLSWVKSSNCAKVIVLSS.HS..RN.LQ..STPF.
Retrocopy LSVNAEVYSLPSKKLVVLQLRSIFIKYKSEPFCEKLLSWVKSSNCAKVIVLSSRHSDPRNELQPPSTPFS

Parental  YLLTPSLQKSIQNKIKNLNWEEMEKSPCIPEISDSEYCIRIPGGGITKTLYDEG
          .LLTPSLQ.SI...............PCIPEISDSE.C.RIPGGGITKTLYDEG
Retrocopy CLLTPSLQRSIXXXXXXXXXXXXXXXPCIPEISDSESCVRIPGGGITKTLYDEG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2496 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000018855	1 retrocopy	retro_cfam_424,
Choloepus hoffmanni	ENSCHOG00000010042	1 retrocopy	retro_chof_1738,
Myotis lucifugus	ENSMLUG00000017744	1 retrocopy	retro_mluc_2496 ,
Macaca mulatta	ENSMMUG00000021855	1 retrocopy	retro_mmul_198,
Nomascus leucogenys	ENSNLEG00000009063	1 retrocopy	retro_nleu_1753,
Oryctolagus cuniculus	ENSOCUG00000005086	1 retrocopy	retro_ocun_1448,
Sus scrofa	ENSSSCG00000021827	2 retrocopies	retro_sscr_1008, retro_sscr_763,