RetrogeneDB ID: | retro_chof_2013 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_45466:9822..10689(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TWF1 | ||
Ensembl ID: | ENSCHOG00000008386 | ||
Aliases: | None | ||
Description: | twinfilin actin-binding protein 1 [Source:HGNC Symbol;Acc:9620] |
Percent Identity: | 81.29 % |
Parental protein coverage: | 75.78 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | FLEPPAGAAGCSQWRIPEPAAAAMSHQTGIQASEDVKDIFARARNGKYRLLKISIENEQLVIGSCSQPSD |
FLE.PA.AA.C....I.EP.AAAMSHQT...ASED.KDI.ARARNGKYRLLKI.IENEQ.VI.SCSQP.D | |
Retrocopy | FLELPARAACCTWYWILEPVAAAMSHQTVMKASEDIKDILARARNGKYRLLKIFIENEQFVIWSCSQPLD |
Parental | SWDKDYDSFVLP-LLEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGH |
SWDKDYD.FVLP.LLEDKQPCYILFR.DS.NAQGYEWIFI.WS..HSHV..KM.Y.ATRA.LKKEFGGGH | |
Retrocopy | SWDKDYDFFVLP<LLEDKQPCYILFRVDSKNAQGYEWIFIPWSSYHSHVHWKM-YMATRAVLKKEFGGGH |
Parental | IKDEVFGTVKEDVSLHGYK-KYLLSQSSPA-PLTAAEEELRQIKINEVQTDVSVDTKHQTLQGVAFPISQ |
IKDEVFGTVK.DVSL..YK.KYLLS.SSPA.P..AAEEEL.QIKINEVQTDV..DT.HQTL.GVAFPISQ | |
Retrocopy | IKDEVFGTVKKDVSLPAYK<KYLLS*SSPA<PVNAAEEEL*QIKINEVQTDVREDTVHQTLKGVAFPISQ |
Parental | EAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPRDSARYHFFLYKHSHEGDYLESIV |
E.FQ.LEKLNNRQLNYVQLEIDIKNEIIIL.NT..TE.KDLP.RIP.DSA.YHFFLYK.SHEGDYLESIV | |
Retrocopy | EDFQPLEKLNNRQLNYVQLEIDIKNEIIILVNTATTEQKDLPNRIPKDSAHYHFFLYKCSHEGDYLESIV |
Parental | FIYSMPGYTCSIKE |
F.YSMPGYTCSI.E | |
Retrocopy | FLYSMPGYTCSIRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017332 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008386 | 5 retrocopies | |
Homo sapiens | ENSG00000151239 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000018535 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000364 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022451 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017931 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007525 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004846 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000022507 | 1 retrocopy |