RetrogeneDB ID: | retro_hsap_4916 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | X:154519806..154520544(-) | ||
Located in intron of: | ENSG00000155962 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000225008 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TWF1 | ||
Ensembl ID: | ENSG00000151239 | ||
Aliases: | TWF1, A6, PTK9 | ||
Description: | twinfilin actin-binding protein 1 [Source:HGNC Symbol;Acc:9620] |
Percent Identity: | 89.2 % |
Parental protein coverage: | 70.86 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | YSQPSDSWDKDYDSFVLPLLEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKE |
YSQPSDSWD.DYDSFVLPLLEDKQ.CYILFRLDSQNAQGYEWIFIAW.PDHSHVRQK.LYAATRATL.KE | |
Retrocopy | YSQPSDSWDNDYDSFVLPLLEDKQLCYILFRLDSQNAQGYEWIFIAWFPDHSHVRQKRLYAATRATLEKE |
Parental | FGGGHIKDEVFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELR-QIKINEVQTDVGVDTKHQTLQGVAF |
.GGGH.KDEVFGTVKEDVSLHGYKK.LLSQSSPAPLT.A.EE....IKINEVQTDVGVD.KHQTLQGVAF | |
Retrocopy | SGGGHVKDEVFGTVKEDVSLHGYKKCLLSQSSPAPLT-AAEEEL>DIKINEVQTDVGVDAKHQTLQGVAF |
Parental | PISREA-FQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDSARYHFFLYKHSHEGDY |
PISREA.F....K.N..QLNYVQLEI.IKNEIIILANTTNTELKDLPKRIPKDSARYHFFLYKHSHEGDY | |
Retrocopy | PISREA<FSGFGK-NK*QLNYVQLEINIKNEIIILANTTNTELKDLPKRIPKDSARYHFFLYKHSHEGDY |
Parental | LESIVFIYSMPGYTCSIRERMLYSSCKSRLLEIVERQLQM |
LESIVFIYSMP.YTCSIRERMLYSSCKS.LLEIVERQL.M | |
Retrocopy | LESIVFIYSMPRYTCSIRERMLYSSCKSPLLEIVERQLWM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .14 RPM | 65 .34 RPM |
bodymap2_adrenal | 0 .02 RPM | 63 .58 RPM |
bodymap2_brain | 0 .00 RPM | 44 .28 RPM |
bodymap2_breast | 0 .00 RPM | 73 .37 RPM |
bodymap2_colon | 0 .04 RPM | 80 .59 RPM |
bodymap2_heart | 0 .04 RPM | 14 .71 RPM |
bodymap2_kidney | 0 .00 RPM | 93 .89 RPM |
bodymap2_liver | 0 .00 RPM | 46 .18 RPM |
bodymap2_lung | 0 .25 RPM | 46 .62 RPM |
bodymap2_lymph_node | 0 .00 RPM | 51 .13 RPM |
bodymap2_ovary | 0 .02 RPM | 84 .18 RPM |
bodymap2_prostate | 0 .00 RPM | 84 .14 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 5 .73 RPM |
bodymap2_testis | 0 .00 RPM | 71 .30 RPM |
bodymap2_thyroid | 0 .15 RPM | 77 .36 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 19 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_3279 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017332 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008386 | 5 retrocopies | |
Homo sapiens | ENSG00000151239 | 2 retrocopies |
retro_hsap_1819, retro_hsap_4916 ,
|
Monodelphis domestica | ENSMODG00000018535 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000364 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022451 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017931 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007525 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004846 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000022507 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .12 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .08 RPM |
FIN_HG00277 | 0 .07 RPM |
FIN_HG00315 | 0 .08 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .04 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .04 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .05 RPM |
GBR_HG00131 | 0 .11 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .06 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .07 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .09 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .06 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .04 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |