RetrogeneDB ID: | retro_ptro_3279 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | X:156076430..156077168(-) | ||
Located in intron of: | ENSPTRG00000022462 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TWF1 | ||
Ensembl ID: | ENSPTRG00000004846 | ||
Aliases: | TWF1, PTK9 | ||
Description: | None |
Percent Identity: | 89.6 % |
Parental protein coverage: | 64.58 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | YSQPSDSWDKDYDSFVLPLLEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKE |
YSQPSDSWDKDYDSFVLPLLEDKQ.CYILFRLDSQNAQGYEWIFIAW.PDHSHVRQK.LYAATRATL.KE | |
Retrocopy | YSQPSDSWDKDYDSFVLPLLEDKQLCYILFRLDSQNAQGYEWIFIAWFPDHSHVRQKRLYAATRATLEKE |
Parental | FGGGHIKDEVFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELR-QIKINEVQTDVGVDTKHQTLQGVAF |
.GGGH.KDEVFGTVKEDVSLHGYKK.LLSQSSPAPLT.A.EE....IKINEVQTDVGVD.KHQTLQGVAF | |
Retrocopy | SGGGHVKDEVFGTVKEDVSLHGYKKCLLSQSSPAPLT-AAEEKL>DIKINEVQTDVGVDAKHQTLQGVAF |
Parental | PISREA-FQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDSARYHFFLYKHSHEGDY |
PISREA.F....K.N..QLNYVQLEI.IKNEIIILANTTNTELKDLPKRIPKDSA.YHFFLYKHSHEGDY | |
Retrocopy | PISREA<FSGFGK-NK*QLNYVQLEINIKNEIIILANTTNTELKDLPKRIPKDSAHYHFFLYKHSHEGDY |
Parental | LESIVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQM |
LESIVFIYSMP.YTCSIRERMLYSSCKSPLLEIVERQL.M | |
Retrocopy | LESIVFIYSMPRYTCSIRERMLYSSCKSPLLEIVERQLWM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .02 RPM | 15 .78 RPM |
SRP007412_cerebellum | 0 .00 RPM | 13 .01 RPM |
SRP007412_heart | 0 .06 RPM | 7 .37 RPM |
SRP007412_kidney | 0 .00 RPM | 36 .17 RPM |
SRP007412_liver | 0 .00 RPM | 22 .23 RPM |
SRP007412_testis | 0 .00 RPM | 14 .75 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4916 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017332 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008386 | 5 retrocopies | |
Homo sapiens | ENSG00000151239 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000018535 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000364 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022451 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017931 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007525 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004846 | 1 retrocopy |
retro_ptro_3279 ,
|
Rattus norvegicus | ENSRNOG00000022507 | 1 retrocopy |