RetrogeneDB ID: | retro_chof_2336 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_66936:2964..3578(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAK16 | ||
Ensembl ID: | ENSCHOG00000009081 | ||
Aliases: | None | ||
Description: | MAK16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:13703] |
Percent Identity: | 60. % |
Parental protein coverage: | 69.59 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | TKTQSF-CRNEYSLTGLCNRSSCPLANSQYATIKEEKGQCYLYMKVIERAAFPRRLWERVLLSKNYEKAL |
TKTQ.F.CRNE.SLT.LCNRSSC.LANS.Y.TI.EEKGQCYL.MKVIE..AF.R.L.E.V.LSKNYEKAL | |
Retrocopy | TKTQRF<CRNEHSLTQLCNRSSCSLANSEYVTINEEKGQCYL*MKVIE*TAFTRCLSEWVWLSKNYEKAL |
Parental | EQIDENLIYWPRFIRHKCKQRFTKITQYLIRIRKLTLKRQRKIVPLSK-KVERREKRREEKALIAAQLDN |
EQIDENLI....FIRHKCKQ...............T.K......P..K.K.E.R.KRR.EK.LIAAQ.D. | |
Retrocopy | EQIDENLICCSCFIRHKCKQIHQDYPVPYLNLKTYT-KATEETCPFEK>KME*RGKRRKEKPLIAAQQDT |
Parental | AIEKELLERLKQDTYSDIYNFPIHAFDKALEQQEAESDSSDAEE-KDDEEEEVD-ETREFLEDDEVDESD |
.IEKEL.ERLK.DTY..IY.FP.HAF.K...Q.E.ESDS....E...D..E..D...R.F.EDDEV..S. | |
Retrocopy | TIEKELQERLK*DTYGGIYGFPGHAFSK-V*QPEVESDSRCWGE<EQDQNEDEDVGKRDFVEDDEVGDSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000009081 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008424 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000018758 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006945 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002758 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008735 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000015832 | 1 retrocopy |