RetrogeneDB ID: | retro_sscr_917 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 7:112079930..112080611(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAK16 | ||
Ensembl ID: | ENSSSCG00000015832 | ||
Aliases: | None | ||
Description: | MAK16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:13703] |
Percent Identity: | 75.76 % |
Parental protein coverage: | 76.77 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MQSDDVIWDTLGNKQFCSFKIRTKTQSFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQCYLYMKVIER |
.QSDDVIW.TLGN.Q.CSFKIRTK.QS.CRN.YSLTGLCN.SS.PLANSQY.TIK.EKGQCYLY.KVIE. | |
Retrocopy | IQSDDVIWNTLGNNQVCSFKIRTKIQSICRNKYSLTGLCNWSSYPLANSQYTTIKKEKGQCYLYIKVIEG |
Parental | AAFPRRLWERVRLHKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYLIRIRKLTLKRQRKLVPLSKK |
AAFPR...E.V.LHKNYEKALEQ.D.NL.YWP.F..HKCKQRFTK.TQYL.RIRKLTLK.QRKLVPLSKK | |
Retrocopy | AAFPRHF*EQVWLHKNYEKALEQTDKNLTYWPHFTQHKCKQRFTKVTQYLTRIRKLTLK*QRKLVPLSKK |
Parental | VE-RREKR-REEKALIAAQLDNAIEKELLERLKQDTYGDIYNFPIHAFDKALEQQEAGSDSSDAEEKDEE |
VE...EK..REEKAL.AAQLDN...K..LERLKQD.YGDIY.F.IH..DK.LE.QEA.SDSSDAEEKD.. | |
Retrocopy | VEWEGEKK>REEKALRAAQLDNVMDKKWLERLKQDQYGDIYSFHIHVLDKPLEEQEAESDSSDAEEKD-- |
Parental | DEEDVGKREF-VEDDEVDESD |
DE..VG.RE..V.DD.VDE.D | |
Retrocopy | DE*NVGRREL<V*DDDVDERD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 7 .43 RPM |
SRP014902_testis | 0 .00 RPM | 15 .56 RPM |
SRP018288_heart | 0 .00 RPM | 30 .25 RPM |
SRP018288_kidney | 0 .00 RPM | 26 .79 RPM |
SRP018288_liver | 0 .00 RPM | 18 .23 RPM |
SRP018288_lung | 0 .00 RPM | 30 .45 RPM |
SRP018856_adipose | 0 .00 RPM | 15 .70 RPM |
SRP035408_brain | 0 .00 RPM | 19 .63 RPM |
SRP035408_liver | 0 .00 RPM | 16 .41 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000009081 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008424 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000018758 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006945 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002758 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008735 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000015832 | 1 retrocopy |
retro_sscr_917 ,
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