RetrogeneDB ID: | retro_chof_587 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_124385:1583..2194(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL6 | ||
Ensembl ID: | ENSCHOG00000002917 | ||
Aliases: | None | ||
Description: | ribosomal protein L6 [Source:HGNC Symbol;Acc:10362] |
Percent Identity: | 87.38 % |
Parental protein coverage: | 71.18 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAGEKAEKPATMEKKPEAKKADASGKVKKSSLKTKKPKKGKPHCSRNPVLVRGIGRYSRSAMYST-KAMY |
M.GEKAEKPATMEKKPEAKKADASGK.KKSSLKTKKPKK.KPHCS.NPVLVRGI.RYSRSAMYS..KAMY | |
Retrocopy | MEGEKAEKPATMEKKPEAKKADASGKAKKSSLKTKKPKKEKPHCS*NPVLVRGISRYSRSAMYSR<KAMY |
Parental | KRKYSAAKSRIEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRK |
KRKYSAAK.RIEKKK.EKVLATV.KP.GGDKN.GTRVVKL.KMPRYYPTEDVP.KLLSHGKKPFSQHVRK | |
Retrocopy | KRKYSAAKFRIEKKK-EKVLATVIKPIGGDKNEGTRVVKLCKMPRYYPTEDVPQKLLSHGKKPFSQHVRK |
Parental | LRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLVLNRVPLRRAHQKFVIATSTKVDISS |
LRSSITP.T.LIILTG.HRGKRVV.LKQLGSGLLLVTGPLVLNRVPL.RAHQKFVIA....V..S. | |
Retrocopy | LRSSITPRTTLIILTGCHRGKRVVLLKQLGSGLLLVTGPLVLNRVPLHRAHQKFVIAVMVPVS*ST |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |