RetrogeneDB ID: | retro_chof_930 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_170313:1096..1902(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL6 | ||
Ensembl ID: | ENSCHOG00000002917 | ||
Aliases: | None | ||
Description: | ribosomal protein L6 [Source:HGNC Symbol;Acc:10362] |
Percent Identity: | 87.78 % |
Parental protein coverage: | 93.4 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAGEKAEKPATMEKK-PEAKKADASGKVKKSSLKTKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSTKAMY |
.AGEKAEKPATMEKK..EAKKADASGKVKKSSLKTKKPKKGKPHCSRNPVL.RGIGRYS.SAM.S.KAMY | |
Retrocopy | IAGEKAEKPATMEKK<TEAKKADASGKVKKSSLKTKKPKKGKPHCSRNPVLIRGIGRYSQSAMHSRKAMY |
Parental | KRKYSAAKSRIEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRK |
KRK..AAKSRIEKKKKEK.L.TVTKP.GGDK.GGTRVVK..KMPRYY.TEDVP.KLLSHGKKPFS.HVRK | |
Retrocopy | KRKCAAAKSRIEKKKKEKILVTVTKPIGGDKSGGTRVVKFHKMPRYYSTEDVPWKLLSHGKKPFS*HVRK |
Parental | LRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLVLNRVPLRRAHQKFVIATSTKVDISSVKIP |
LR.SITPGTVLI.LTG.HRGKRVV.LKQLGSGLLLVTGPLVLN.VPL.RAHQKFVIATSTK.DIS.VKIP | |
Retrocopy | LRFSITPGTVLIVLTGHHRGKRVVLLKQLGSGLLLVTGPLVLNQVPLCRAHQKFVIATSTKIDISGVKIP |
Parental | KHLTDAYFKKKKLHKPRHQEGEIFDTEKEKYELTEQRKVDQKTVDSQLMPKIKAVPQLQG |
KHLTDAYFKKK.L.KPRHQEGEIF.TEKEKY.LTEQRKVD.KTVD.QL.PKIKAVPQLQG | |
Retrocopy | KHLTDAYFKKKQLCKPRHQEGEIFHTEKEKYALTEQRKVD*KTVDLQLTPKIKAVPQLQG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |