RetrogeneDB ID: | retro_chof_760 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_144123:4966..5694(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATF1 | ||
Ensembl ID: | ENSCHOG00000004733 | ||
Aliases: | None | ||
Description: | activating transcription factor 1 [Source:HGNC Symbol;Acc:783] |
Percent Identity: | 81.53 % |
Parental protein coverage: | 91.51 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | HISHIAQQASSLSESEESQDSSDSIGSSQKTHGILARRPSYRKILKDLSSEDIRGRKGDGENPGVSTVTS |
H..H..Q.ASSLSESEE..DSSDS.GSSQKTHGILAR.PS.RKILKDLSS.DI.GRKGDGEN.GVSTVT. | |
Retrocopy | HAPHM-QTASSLSESEE-WDSSDSRGSSQKTHGILARCPSHRKILKDLSSKDIQGRKGDGENHGVSTVTC |
Parental | MSVPTPIYQTSTGQYIAIAPNGALQ-LASPGTDGVQGLQTLTMTNSGSSQQGTTTILQYAQTSDGQQILV |
.S.PT.I.QTS..QYIAIAPNGA.Q..ASPGT.GVQGLQTLTMTNSGS.Q.GT..ILQYA.TSDGQQILV | |
Retrocopy | LSLPTSICQTS--QYIAIAPNGAFQ<AASPGTYGVQGLQTLTMTNSGSTQEGTI-ILQYAETSDGQQILV |
Parental | PSNQVVVQTASGDMQTYQIRTTPTASSLPQTVVMTSPVNLTSQTTKTDDPQLKREIRLMKNREAARECRR |
PSNQ.VVQTA.GDM.TYQ...TPT..SLPQT.VMTSPVNL.SQT.K.D.P.LKREIRLMKNREAA.EC.R | |
Retrocopy | PSNQMVVQTA*GDM*TYQMCITPTITSLPQTAVMTSPVNLPSQTAKADEP*LKREIRLMKNREAA*ECHR |
Parental | KKKEYVKCLENRVAVLENQNKTLIEELKTLKDLYSHKSV |
KKKEYVKCLEN.VAVLENQNKTLIEELKTLKDLYSHKSV | |
Retrocopy | KKKEYVKCLENQVAVLENQNKTLIEELKTLKDLYSHKSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004733 | 5 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008000 | 2 retrocopies | |
Felis catus | ENSFCAG00000013892 | 1 retrocopy | |
Homo sapiens | ENSG00000123268 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000003301 | 1 retrocopy | |
Mus musculus | ENSMUSG00000023027 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017023 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000010038 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004637 | 2 retrocopies |