RetrogeneDB ID: | retro_eeur_704 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_91265:493..861(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATF1 | ||
Ensembl ID: | ENSEEUG00000008000 | ||
Aliases: | None | ||
Description: | activating transcription factor 1 [Source:HGNC Symbol;Acc:783] |
Percent Identity: | 89.6 % |
Parental protein coverage: | 51.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ASPGTDG-VQGLQALTMTNSGSTQQGTTILQYAQTSDGQQILVPSNQVVVQTASGDMQTYQIRTTPSATS |
ASP.TD..VQGLQA.TMTNSGSTQQGT.ILQYAQTSDGQQILV.SNQV..QTASGDMQ.YQI.TTPSATS | |
Retrocopy | ASPSTDE<VQGLQAFTMTNSGSTQQGT-ILQYAQTSDGQQILVTSNQVIIQTASGDMQNYQIHTTPSATS |
Parental | LPQTVVMTSPVTLTSQTTKTDDPQLKREIRLMKNREAARECRRKKKEYVKCLENR |
.PQTVVMTSPVTLTSQTTKTDDPQLKREIRLMKNREAARE.RRKKKEYVKCLEN. | |
Retrocopy | QPQTVVMTSPVTLTSQTTKTDDPQLKREIRLMKNREAARESRRKKKEYVKCLENK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 12 .09 RPM |
SRP017611_kidney | 0 .00 RPM | 45 .38 RPM |
SRP017611_liver | 0 .00 RPM | 22 .67 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004733 | 5 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008000 | 2 retrocopies |
retro_eeur_332, retro_eeur_704 ,
|
Homo sapiens | ENSG00000123268 | 1 retrocopy | |
Mus musculus | ENSMUSG00000023027 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017023 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000026029 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000010038 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004637 | 2 retrocopies |