Parental gene: | ATF1, ENSEEUG00000008000 |
| Aliases: | None |
| Description: | activating transcription factor 1 [Source:HGNC Symbol;Acc:783] |
| Organism: | Hedgehog (Erinaceus europaeus) |
| Coordinates: | GeneScaffold_3082:5826..22745(+) |
>ENSEEUG00000008000
GTATCGTCTTTATCAGAAAGTGAGGAGTCTCAGGACTCATCCGACAGTATAGGTTCCTCACAGAAAGTCCACGGGATCCT
TGCACGGCGCCCATCGTACAGAAAAATTTTGAAAGACCTATCTTCTGAAGATACACGAGGCAGGAAAGGAGACGGAGAAA
ACCCTGGAATTTCTGCTGTCACTTCTATGTCTGTCCCAACTCCCATCTATCAGACTAGCACTGGACAGTACATTGCCATC
GCCCCAAATGGAGCCTTACAGCTGGCCAGTCCAGGCACAGATGGAGTACAGGGACTTCAGGCATTAACCATGACAAATTC
AGGCAGCACTCAGCAAGGAACAACAATTCTTCAGTATGCACAGACCTCTGATGGACAGCAGATACTAGTGCCCAGCAACC
AGGTGGTCGTACAGACTGCATCAGGAGATATGCAGACCTATCAGATCCGTACCACACCCTCAGCTACTTCGCTGCCACAG
ACTGTGGTGATGACATCTCCTGTGACTCTTACATCGCAGACCACTAAGACAGATGACCCCCAGTTGAAAAGAGAAATCAG
GTTGATGAAAAACAGAGAAGCTGCTCGAGAATGCCGCAGAAAGAAGAAAGAATACGTGAAATGCCTGGAGAACAGAGTTG
CGGTCCTGGAGAATCAGAACAAAACCCTGATAGAAGAGCTAAAGACTTTGAAGGACCTTTATTCCCATAAAAGTGTTTGA
GTATCGTCTTTATCAGAAAGTGAGGAGTCTCAGGACTCATCCGACAGTATAGGTTCCTCACAGAAAGTCCACGGGATCCT
TGCACGGCGCCCATCGTACAGAAAAATTTTGAAAGACCTATCTTCTGAAGATACACGAGGCAGGAAAGGAGACGGAGAAA
ACCCTGGAATTTCTGCTGTCACTTCTATGTCTGTCCCAACTCCCATCTATCAGACTAGCACTGGACAGTACATTGCCATC
GCCCCAAATGGAGCCTTACAGCTGGCCAGTCCAGGCACAGATGGAGTACAGGGACTTCAGGCATTAACCATGACAAATTC
AGGCAGCACTCAGCAAGGAACAACAATTCTTCAGTATGCACAGACCTCTGATGGACAGCAGATACTAGTGCCCAGCAACC
AGGTGGTCGTACAGACTGCATCAGGAGATATGCAGACCTATCAGATCCGTACCACACCCTCAGCTACTTCGCTGCCACAG
ACTGTGGTGATGACATCTCCTGTGACTCTTACATCGCAGACCACTAAGACAGATGACCCCCAGTTGAAAAGAGAAATCAG
GTTGATGAAAAACAGAGAAGCTGCTCGAGAATGCCGCAGAAAGAAGAAAGAATACGTGAAATGCCTGGAGAACAGAGTTG
CGGTCCTGGAGAATCAGAACAAAACCCTGATAGAAGAGCTAAAGACTTTGAAGGACCTTTATTCCCATAAAAGTGTTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 22 .67 RPM |
| SRP017611_kidney | 45 .38 RPM |
| SRP017611_brain | 12 .09 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000004733 | ortholog_one2one | 5 retrogenes | |
| Homo sapiens | ENSG00000123268 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000023027 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000017023 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000026029 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000010038 | ortholog_one2one | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000004637 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_eeur_332 | 83.92 | 80.33 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_eeur_704 | 89.60 | 51.88 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSEEUG00000008000 retrocopies