Parental gene:

ATF1, ENSG00000123268

Aliases:ATF1, EWS-ATF1, FUS/ATF-1, TREB36
Description:activating transcription factor 1 [Source:HGNC Symbol;Acc:783]
Organism:Human (Homo sapiens)
Coordinates:12:51157492..51214905(+)


>ENSG00000123268
ATGGAAGATTCCCACAAGAGTACCACGTCAGAGACAGCACCTCAACCTGGTTCAGCAGTTCAGGGAGCTCACATTTCTCA
TATTGCTCAACAGGTATCATCTTTATCAGAAAGTGAGGAGTCCCAGGACTCATCCGACAGCATAGGCTCCTCACAGAAAG
CCCACGGGATCCTAGCACGGCGCCCATCTTACAGAAAAATTTTGAAAGACTTATCTTCTGAAGATACACGGGGCAGAAAA
GGAGACGGAGAAAATTCTGGAGTTTCTGCTGCTGTCACTTCTATGTCTGTTCCAACTCCCATCTATCAGACTAGCAGCGG
ACAGTACATTGCCATTGCCCCAAATGGAGCCTTACAGTTGGCAAGTCCAGGCACAGATGGAGTACAGGGACTTCAGACAT
TAACCATGACAAATTCAGGCAGTACTCAGCAAGGTACAACTATTCTTCAGTATGCACAGACCTCTGATGGACAGCAGATA
CTTGTGCCCAGCAATCAGGTGGTCGTACAAACTGCATCAGGAGATATGCAAACATATCAGATCCGAACTACACCTTCAGC
TACTTCTCTGCCACAAACTGTGGTGATGACATCTCCTGTGACTCTCACCTCTCAGACAACTAAGACAGATGACCCCCAAT
TGAAAAGAGAAATAAGGTTAATGAAAAACAGAGAAGCTGCTCGAGAATGTCGCAGAAAGAAGAAAGAATATGTGAAATGC
CTGGAAAACCGAGTTGCAGTCCTGGAAAATCAAAATAAAACTCTAATAGAAGAGTTAAAAACTTTGAAGGATCTTTATTC
CAATAAAAGTGTTTGA

Library Parental gene expression (RPM)
bodymap2_liver 12 .48 RPM
bodymap2_lung 30 .06 RPM
bodymap2_breast 25 .06 RPM
bodymap2_adipose 27 .91 RPM
bodymap2_adrenal 27 .51 RPM
bodymap2_skeletal_muscle 26 .48 RPM
bodymap2_thyroid 43 .03 RPM
bodymap2_prostate 39 .59 RPM
bodymap2_colon 28 .15 RPM
bodymap2_testis 31 .97 RPM
bodymap2_brain 8 .58 RPM
bodymap2_heart 18 .02 RPM
bodymap2_white_blood_cells 49 .85 RPM
bodymap2_lymph_node 41 .50 RPM
bodymap2_ovary 46 .65 RPM
bodymap2_kidney 37 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004733 ortholog_one2one 5 retrogenes
retro_chof_1987, retro_chof_2305, retro_chof_27, retro_chof_462, retro_chof_760,
Erinaceus europaeus ENSEEUG00000008000 ortholog_one2one 2 retrogenes
retro_eeur_332, retro_eeur_704,
Mus musculus ENSMUSG00000023027 ortholog_one2one 1 retrogene
retro_mmus_3609,
Oryctolagus cuniculus ENSOCUG00000017023 ortholog_one2one 1 retrogene
retro_ocun_383,
Otolemur garnettii ENSOGAG00000026029 ortholog_one2one 1 retrogene
retro_ogar_1378,
Procavia capensis ENSPCAG00000010038 ortholog_one2one 2 retrogenes
retro_pcap_303, retro_pcap_442,
Sarcophilus harrisii ENSSHAG00000004637 ortholog_one2one 2 retrogenes
retro_shar_221, retro_shar_635,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_3633 69.74 75.00
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Download FASTA sequences of all ENSG00000123268 retrocopies