RetrogeneDB ID: | retro_cjac_3234 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 9:83003470..83003914(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAGOHB | ||
Ensembl ID: | ENSCJAG00000021662 | ||
Aliases: | None | ||
Description: | mago-nashi homolog B (Drosophila) [Source:HGNC Symbol;Acc:25504] |
Percent Identity: | 84.46 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSMASDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSE |
M.MASDFYL.YY..HKG.FGHEFLEF.F..D.KLR.A.NSNYKN.VMIRKEAYVHKSVME.LKRIIDDSE | |
Retrocopy | MAMASDFYLHYYMEHKGRFGHEFLEFKFWLDRKLRCAKNSNYKNNVMIRKEAYVHKSVMEQLKRIIDDSE |
Parental | ITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIG |
ITKE.DALWP.PDRVG.QELEIVI.DEHISF.TSKI..LIDVNQSKDPEGL.VFYYLVQD.KCLVFSLI. | |
Retrocopy | ITKEGDALWPTPDRVGQQELEIVIRDEHISFATSKISYLIDVNQSKDPEGL*VFYYLVQDFKCLVFSLIV |
Parental | LHFKIKPI |
LHFKIKPI | |
Retrocopy | LHFKIKPI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .04 RPM | 2 .84 RPM |
SRP051959_heart | 0 .02 RPM | 2 .35 RPM |
SRP051959_kidney | 0 .29 RPM | 3 .82 RPM |
SRP051959_liver | 0 .11 RPM | 3 .81 RPM |
SRP051959_lung | 0 .03 RPM | 3 .20 RPM |
SRP051959_lymph_node | 0 .09 RPM | 2 .85 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 2 .23 RPM |
SRP051959_spleen | 0 .04 RPM | 3 .07 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004382 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004538 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000021662 | 7 retrocopies |
retro_cjac_1336, retro_cjac_1840, retro_cjac_1858, retro_cjac_2354, retro_cjac_3234 , retro_cjac_3250, retro_cjac_546,
|
Dasypus novemcinctus | ENSDNOG00000005997 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000016591 | 3 retrocopies | |
Homo sapiens | ENSG00000111196 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000001782 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000005082 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000462 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003355 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000000548 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000004679 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000000835 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014820 | 7 retrocopies | |
Tarsius syrichta | ENSTSYG00000010452 | 7 retrocopies |