RetrogeneDB ID: | retro_opri_308 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_5019:264735..265175(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAGOHB | ||
Ensembl ID: | ENSOPRG00000000548 | ||
Aliases: | None | ||
Description: | mago-nashi homolog B (Drosophila) [Source:HGNC Symbol;Acc:25504] |
Percent Identity: | 87.16 % |
Parental protein coverage: | 99.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SMASDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYV-HKSVMEELKRIIDDSE |
.M.SDFYLRYYVGHKGKF.HE.LEFEF.P.GKLRYANNSNYKNDVM.RK.AY..HKSVM.ELKRIIDDSE | |
Retrocopy | AMESDFYLRYYVGHKGKFSHELLEFEFQPNGKLRYANNSNYKNDVMTRKGAYD<HKSVMKELKRIIDDSE |
Parental | ITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIG |
ITKED.ALW..PDRVG.QELEIVIGDEHISFTTSK.GSLIDVN..KDPEGLR.FYYLVQDLKCLVFSLIG | |
Retrocopy | ITKEDEALWLSPDRVGLQELEIVIGDEHISFTTSKVGSLIDVNRAKDPEGLRLFYYLVQDLKCLVFSLIG |
Parental | LHFKIKPI |
LHFKIKPI | |
Retrocopy | LHFKIKPI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |