RetrogeneDB ID: | retro_tsyr_1730 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_561923:36..452(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAGOHB | ||
Ensembl ID: | ENSTSYG00000010452 | ||
Aliases: | None | ||
Description: | mago-nashi homolog B (Drosophila) [Source:HGNC Symbol;Acc:25504] |
Percent Identity: | 76.43 % |
Parental protein coverage: | 93.24 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | YYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWP |
.Y...KGKF..EFLEFEFR...K.R..NNSN.K.DVMIRKEAYVH.SVMEELKR.IDDSEIT.EDDA.WP | |
Retrocopy | FYPFSKGKFDQEFLEFEFRSNRK*RHDNNSNCKSDVMIRKEAYVHRSVMEELKRMIDDSEITQEDDAIWP |
Parental | PPDRVGRQELEIVIGD-EHISF-TTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI |
.PDRVGRQELE..IGD..H.SF..TSK.GSLIDVNQSKDPE.L..F.YLVQDLKCLVFSLI.LHFKIK.I | |
Retrocopy | LPDRVGRQELEVIIGD>KHNSF>ITSKTGSLIDVNQSKDPENL*IFDYLVQDLKCLVFSLIELHFKIKLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004382 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000021662 | 7 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000005997 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000016591 | 3 retrocopies | |
Homo sapiens | ENSG00000111196 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000001782 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000005082 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000462 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003355 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000000548 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000004679 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000000835 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014820 | 7 retrocopies | |
Tarsius syrichta | ENSTSYG00000010452 | 7 retrocopies |
retro_tsyr_1730 , retro_tsyr_1748, retro_tsyr_383, retro_tsyr_658, retro_tsyr_81, retro_tsyr_908, retro_tsyr_966,
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