RetrogeneDB ID: | retro_cjac_3812 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | GL284753.1:311063..311691(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MTCH2 | ||
Ensembl ID: | ENSCJAG00000020213 | ||
Aliases: | None | ||
Description: | mitochondrial carrier 2 [Source:HGNC Symbol;Acc:17587] |
Percent Identity: | 69.34 % |
Parental protein coverage: | 69.64 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | ASQVLLGSGLTILSQPLMYVKVLIQVGYEPLPPTIGRNIFGRQVCQLPGLFCYAQHIASIDGRRGLFTGL |
ASQVLL.SGLTILSQ.LM..KVLIQVGYEPLPP.IG..I...Q.CQL....CYA.HIASIDGRRGLFT.. | |
Retrocopy | ASQVLLNSGLTILSQ*LMHMKVLIQVGYEPLPP-IGQTILEWQACQLSVFLCYALHIASIDGRRGLFTSF |
Parental | TPRLCSGVLGTVVHGKVLQHYQESDKGEELGPGNVQKEVSSSFDRVIKETTREMIARSAATLI-THPFHV |
.P.LC.GVLGTVVH.KVLQHYQE..KG.ELGPG..QKEV.SSFD..IKE.T........A.....HPFHV | |
Retrocopy | IP*LCLGVLGTVVHSKVLQHYQECNKGQELGPGYEQKEVLSSFD*IIKE-TAQEMISCSAAAL>SHPFHV |
Parental | ITLRSMVQFIGRESKYCGLCDSIVTIYREEGILGFFAGLVPRLLGDILSLWLCNSLAYLVNTYALDSGVS |
.TLRS..QFI.RESK.CGLCD.I.TIY.E.GILGFF.G.VP..LGDI.SL.LC.SLAYLV.TYA.DS.VS | |
Retrocopy | LTLRSTAQFIDRESKFCGLCDTILTIYQEDGILGFFLGPVPHPLGDIISL*LCDSLAYLVDTYAIDSVVS |
Parental | TM |
.. | |
Retrocopy | LL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 30 .84 RPM |
SRP051959_heart | 0 .00 RPM | 23 .77 RPM |
SRP051959_kidney | 0 .00 RPM | 42 .07 RPM |
SRP051959_liver | 0 .00 RPM | 29 .52 RPM |
SRP051959_lung | 0 .00 RPM | 16 .12 RPM |
SRP051959_lymph_node | 0 .00 RPM | 22 .62 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 35 .73 RPM |
SRP051959_spleen | 0 .00 RPM | 20 .48 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018742 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008473 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005273 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000020213 | 3 retrocopies |
retro_cjac_1551, retro_cjac_2003, retro_cjac_3812 ,
|
Dasypus novemcinctus | ENSDNOG00000001221 | 1 retrocopy | |
Homo sapiens | ENSG00000109919 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000008281 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000003852 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027282 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014704 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006368 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000011607 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003296 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000003573 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000007348 | 1 retrocopy | |
Sorex araneus | ENSSARG00000001399 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000013232 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000014169 | 2 retrocopies |