RetrogeneDB ID: | retro_ttru_353 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_1967:392284..392762(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MTCH2 | ||
Ensembl ID: | ENSTTRG00000014169 | ||
Aliases: | None | ||
Description: | mitochondrial carrier 2 [Source:HGNC Symbol;Acc:17587] |
Percent Identity: | 83.12 % |
Parental protein coverage: | 52.16 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MADAASQVLLGSGLTILSQPLMYVKVLIQVGYEPLPPTIGRNIFGRQVCQLPGLFCYAQHIASIDGKRGL |
MADAASQVLLGS.LTILSQPLMY.KVLIQVGYEPLPPT...NIFG...........YAQHIASI.GKRGL | |
Retrocopy | MADAASQVLLGSSLTILSQPLMYMKVLIQVGYEPLPPTTE*NIFGAAILSASSSSHYAQHIASISGKRGL |
Parental | FTGLTPRLCSGVL-GTVVHGKVLQHYQECD--GESGSGNVLKEVSSSFDRVIKETTREMMARSAATLITH |
FTGLTPRLCSGVL.GTVVHGKVLQHYQECD...ESGSGNV.KEVSSSFD.VIKETTRE..A.SAATLITH | |
Retrocopy | FTGLTPRLCSGVL>GTVVHGKVLQHYQECDKAEESGSGNVQKEVSSSFD*VIKETTREVTAHSAATLITH |
Parental | PFHVITLRSMVQFIGRESKY |
PFHVITLRS.VQFIGRESKY | |
Retrocopy | PFHVITLRSVVQFIGRESKY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018742 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008473 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000020213 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000001221 | 1 retrocopy | |
Homo sapiens | ENSG00000109919 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000008281 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000003852 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027282 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014704 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006368 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000011607 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003296 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000003573 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000007348 | 1 retrocopy | |
Sorex araneus | ENSSARG00000001399 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000013232 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000001966 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000014169 | 2 retrocopies |
retro_ttru_1476, retro_ttru_353 ,
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