RetrogeneDB - Parental gene ENSCJAG00000000132 details

							
>ENSCJAG00000000132
ATGGCTCCCGTGAAAAAGCTTGTGGCGAAGGGGGGCAAAAAAAAGAAGCAGGTTCTGAAGTTCACTCTTGATTGTACCCA

CCCTGTAGAAGATGGAATCATGGATGCTGCCAATTTTGAGCAGTTTTTGCAAGAAAGGATCAAAGTGAACGGAAAAGCCG

GGAACCTTGGTGGAGGGGTGGTGACCATCGAAAGGAGCAAGAGCAAGATCACTGTGACGTCTGAGGTGCCCTTCTCCAAA

AGGTATTTGAAATATCTCACCAAAAAATATTTGAAGAAGAATAATCTACGTGATTGGTTGCGCGTAGTTGCTAACAGCAA

AGAGAGTTACGAATTACGTTACTTCCAGATTAACCAGGACGAAGAAGAGGAGGAAGACGAAGATTAA

Library	Parental gene expression (RPM)
SRP051959_spleen	129 .01 RPM
SRP051959_skeletal_muscle	76 .52 RPM
SRP051959_lymph_node	147 .76 RPM
SRP051959_lung	102 .40 RPM
SRP051959_liver	99 .12 RPM
SRP051959_kidney	85 .93 RPM
SRP051959_heart	79 .35 RPM
SRP051959_colon	75 .77 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000009864	ortholog_one2one	7 retrogenes	retro_amel_1219, retro_amel_1247, retro_amel_1775, retro_amel_1793, retro_amel_369, retro_amel_830, retro_amel_870,
Bos taurus	ENSBTAG00000014423	ortholog_one2one	4 retrogenes	retro_btau_1491, retro_btau_566, retro_btau_694, retro_btau_892,
Choloepus hoffmanni	ENSCHOG00000007477	ortholog_one2one	2 retrogenes	retro_chof_1785, retro_chof_2537,
Callithrix jacchus	ENSCJAG00000002427	within_species_paralog	1 retrogene	retro_cjac_3983,
Dasypus novemcinctus	ENSDNOG00000013166	ortholog_one2one	8 retrogenes	retro_dnov_1282, retro_dnov_1523, retro_dnov_2043, retro_dnov_2126, retro_dnov_38, retro_dnov_382, retro_dnov_425, retro_dnov_567,
Felis catus	ENSFCAG00000006320	ortholog_one2one	3 retrogenes	retro_fcat_1591, retro_fcat_1656, retro_fcat_1715,
Homo sapiens	ENSG00000116251	ortholog_one2one	16 retrogenes	retro_hsap_1162, retro_hsap_1299, retro_hsap_1445, retro_hsap_1720, retro_hsap_2136, retro_hsap_2138, retro_hsap_2142, retro_hsap_2306, retro_hsap_2315, retro_hsap_349, retro_hsap_3814, retro_hsap_485, retro_hsap_4865, retro_hsap_4909, retro_hsap_600, retro_hsap_726,
Gorilla gorilla	ENSGGOG00000027739	possible_ortholog	10 retrogenes	retro_ggor_1111, retro_ggor_1652, retro_ggor_1655, retro_ggor_1708, retro_ggor_1757, retro_ggor_2268, retro_ggor_2567, retro_ggor_37, retro_ggor_531, retro_ggor_613,
Loxodonta africana	ENSLAFG00000006352	ortholog_one2one	5 retrogenes	retro_lafr_1100, retro_lafr_380, retro_lafr_649, retro_lafr_981, retro_lafr_993,
Macaca mulatta	ENSMMUG00000018347	possible_ortholog	12 retrogenes	retro_mmul_1004, retro_mmul_1044, retro_mmul_1047, retro_mmul_1512, retro_mmul_2209, retro_mmul_2264, retro_mmul_2467, retro_mmul_2601, retro_mmul_271, retro_mmul_445, retro_mmul_469, retro_mmul_80,
Mustela putorius furo	ENSMPUG00000007087	ortholog_one2many	6 retrogenes	retro_mputfur_1074, retro_mputfur_1277, retro_mputfur_134, retro_mputfur_1433, retro_mputfur_578, retro_mputfur_873,
Mus musculus	ENSMUSG00000028936	ortholog_one2one	5 retrogenes	retro_mmus_1883, retro_mmus_1906, retro_mmus_2123, retro_mmus_2459, retro_mmus_3171,
Nomascus leucogenys	ENSNLEG00000010337	ortholog_one2one	10 retrogenes	retro_nleu_1309, retro_nleu_2354, retro_nleu_2367, retro_nleu_2509, retro_nleu_2747, retro_nleu_2772, retro_nleu_2783, retro_nleu_2881, retro_nleu_2946, retro_nleu_3003,
Otolemur garnettii	ENSOGAG00000014776	ortholog_one2one	7 retrogenes	retro_ogar_1116, retro_ogar_1415, retro_ogar_1418, retro_ogar_2188, retro_ogar_2979, retro_ogar_399, retro_ogar_917,
Pongo abelii	ENSPPYG00000001951	ortholog_one2one	11 retrogenes	retro_pabe_1196, retro_pabe_1213, retro_pabe_1435, retro_pabe_166, retro_pabe_248, retro_pabe_3114, retro_pabe_349, retro_pabe_3782, retro_pabe_3817, retro_pabe_590, retro_pabe_966,
Pan troglodytes	ENSPTRG00000000076	ortholog_one2one	14 retrogenes	retro_ptro_1562, retro_ptro_1563, retro_ptro_1630, retro_ptro_1690, retro_ptro_2596, retro_ptro_275, retro_ptro_3056, retro_ptro_3240, retro_ptro_365, retro_ptro_502, retro_ptro_517, retro_ptro_795, retro_ptro_950, retro_ptro_984,
Rattus norvegicus	ENSRNOG00000011104	ortholog_one2one	5 retrogenes	retro_rnor_1315, retro_rnor_1687, retro_rnor_2089, retro_rnor_2149, retro_rnor_439,
Sus scrofa	ENSSSCG00000003367	ortholog_one2one	4 retrogenes	retro_sscr_257, retro_sscr_276, retro_sscr_497, retro_sscr_509,
Tupaia belangeri	ENSTBEG00000009172	ortholog_one2one	33 retrogenes	retro_tbel_1047, retro_tbel_1181, retro_tbel_1263, retro_tbel_1422, retro_tbel_1773, retro_tbel_1951, retro_tbel_2121, retro_tbel_2182, retro_tbel_2231, retro_tbel_2429, retro_tbel_2452, retro_tbel_2801, retro_tbel_2923, retro_tbel_3090, retro_tbel_3160, retro_tbel_3265, retro_tbel_3362, retro_tbel_3482, retro_tbel_3719, retro_tbel_3885, retro_tbel_3960, retro_tbel_397, retro_tbel_4199, retro_tbel_4225, retro_tbel_4386, retro_tbel_4437, retro_tbel_4607, retro_tbel_504, retro_tbel_582, retro_tbel_659, retro_tbel_680, retro_tbel_755, retro_tbel_920,
Tursiops truncatus	ENSTTRG00000010488	ortholog_one2one	8 retrogenes	retro_ttru_1268, retro_ttru_147, retro_ttru_1519, retro_ttru_1564, retro_ttru_1739, retro_ttru_413, retro_ttru_714, retro_ttru_871,
Vicugna pacos	ENSVPAG00000009466	ortholog_one2one	1 retrogene	retro_vpac_330,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cjac_472	98.44	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cjac_611	96.18	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cjac_867	73.02	97.66	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cjac_1032	71.43	74.22	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cjac_1055	69.77	96.88	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cjac_1257	73.77	92.97	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cjac_1301	98.43	99.22	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_cjac_2352	56.59	99.22	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_cjac_2436	79.65	87.50	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_cjac_2874	79.39	100.00	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_cjac_2954	79.53	98.44	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_cjac_3925	72.73	74.22	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCJAG00000000132 retrocopies

Parental gene:	RPL22, ENSCJAG00000000132
Aliases:	None
Description:	ribosomal protein L22 [Source:HGNC Symbol;Acc:10315]
Organism:	*Marmoset (Callithrix jacchus)*
Coordinates:	7:40541744..40575656(-)

Parental gene:

RPL22, ENSCJAG00000000132